Updated documentation workflo due to recent changes in JOSS review. N…

…owow the website source is the public repo.

.github/workflows/documentation.yml

@@ -34,7 +34,7 @@ jobs:
         with:
           version: '1.9'
       - name: Install dependencies
-        run: julia --project=docs -e 'using Pkg; Pkg.add("MRIGradients"); Pkg.develop(PackageSpec(path=pwd())); Pkg.add("Documenter"); Pkg.add("Literate"); Pkg.instantiate()'
+        run: julia --project=docs -e 'using Pkg; Pkg.develop(PackageSpec(path=pwd())); Pkg.instantiate()'
       - name: Build Documents through Documenter.jl
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} # For authentication with GitHub Actions token

.gitignore

@@ -3,3 +3,4 @@ LocalPreferences.toml
 GIRFReco.code-workspace
 docs/build/
 docs/src/generated/
+.vscode/

docs/make.jl

@@ -1,6 +1,6 @@
-push!(LOAD_PATH, "../src")
-push!(LOAD_PATH, "../recon/")
-push!(LOAD_PATH, "../utils/")
+push!(LOAD_PATH, "../src/")
+push!(LOAD_PATH, "../src/io/")
+push!(LOAD_PATH, "../src/utils/")
 
 using Documenter, Literate, GIRFReco
 
@@ -25,7 +25,7 @@ makedocs(
 )
 
 deploydocs(
-    repo = "github.com/BRAIN-TO/GIRFReco.git",
+    repo = "github.com/BRAIN-TO/GIRFReco.jl.git",
     push_preview = true,
     # deploy_config = Documenter.GitHubActions(),
     devbranch = "main",

docs/src/Utilities.md

@@ -1,4 +1,4 @@
 ```@autodocs
 Modules = [GIRFReco]
-Pages   = ["utils.jl", "gradient_reader.jl"]
+Pages   = ["utils.jl", "gradient_reader.jl", "fieldmap_estimator.jl"]
 ```