Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

MRIFieldmaps.jl Integration #35

Merged
merged 1 commit into from
Aug 19, 2024
Merged

MRIFieldmaps.jl Integration #35

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
1 commit
Select commit
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
2 changes: 1 addition & 1 deletion example/recon_config_joss_demo.jl
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -18,7 +18,7 @@ params_general = Dict{Symbol,Any}();
params_general[:gamma] = 42577478;

# General options for reconstruction script:
params_general[:do_load_maps] = true # if true, reloads B₀/SENSE maps instead of recalculating
params_general[:do_load_maps] = false # if true, reloads B₀/SENSE maps instead of recalculating
params_general[:do_save_recon] = true # if true, saves reconstruction and all auxiliary image data (maps) as NIfTI files
params_general[:do_plot_recon] = true # if true, plots intermediate debugging and output recon figures (needs graphics, not recommended in multi-thread mode due to PyPlot)
params_general[:do_process_map_scan] = true # if true, compute sensitivity and B₀ maps from reconstructed Cartesian scan
Expand Down
1 change: 1 addition & 0 deletions src/GIRFReco.jl
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -24,6 +24,7 @@ using MRICoilSensitivities
using RegularizedLeastSquares
using Flux
using MRIReco
using MRIFieldmaps

# using MosaicViews

Expand Down
2 changes: 1 addition & 1 deletion src/utils/utils.jl
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -981,7 +981,7 @@ function run_cartesian_recon(params_general)
b0_maps, times, out = b0map(
reshape(cartesian_reco.data[:, :, :, :, 1, 1], (200, 200, num_slices,1, 2)),
(TE1 / 1000.0, TE2 / 1000.0);
smap = ones(size(b0_maps)),
smap = ones(ComplexF32,size(b0_maps,1),size(b0_maps,2),size(b0_maps,3),1),
track =true,
chat = true,
chat_iter = 2
Expand Down
Loading