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BU-ISCIII

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  1. plasmidID plasmidID Public

    PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.

    Shell 38 8

  2. iskylims iskylims Public

    is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

    Python 72 35

  3. buisciii-tools buisciii-tools Public

    set of helper tools for bu-isciii management of its core services portfolio.

    Python 1 12

  4. viralrecon viralrecon Public

    Forked from nf-core/viralrecon

    Assembly and intrahost/low-frequency variant calling for viral samples

    Nextflow 5

  5. BU-ISCIII BU-ISCIII Public

    Our Wiki and main public documentation repository.

    3 8

Repositories

Showing 10 of 67 repositories
  • iskylims Public

    is an open-source LIMS (laboratory Information Management System) for Next Generation Sequencing sample management, statistics and reports, and bioinformatics analysis service management.

    BU-ISCIII/iskylims’s past year of commit activity
    Python 72 GPL-3.0 35 35 3 Updated Nov 15, 2024
  • galaxy_virologist_training Public

    Galaxy training for virology profiles

    BU-ISCIII/galaxy_virologist_training’s past year of commit activity
    HTML 0 3 2 0 Updated Nov 15, 2024
  • relecov-tools Public

    set of helper tools for the assembly of the different elements in the RELECOV platform (Spanish Network for genomic surveillance of SARS-Cov-2) as data download, processing, validation and upload to public databases, as well as analysis runs and database storage.

    BU-ISCIII/relecov-tools’s past year of commit activity
    Python 5 GPL-3.0 21 17 1 Updated Nov 14, 2024
  • relecov-platform Public
    BU-ISCIII/relecov-platform’s past year of commit activity
    Python 1 GPL-3.0 5 11 1 Updated Nov 14, 2024
  • buisciii-tools Public

    set of helper tools for bu-isciii management of its core services portfolio.

    BU-ISCIII/buisciii-tools’s past year of commit activity
    Python 1 GPL-3.0 12 15 0 Updated Nov 14, 2024
  • BU-ISCIII Public

    Our Wiki and main public documentation repository.

    BU-ISCIII/BU-ISCIII’s past year of commit activity
    3 8 2 0 Updated Nov 14, 2024
  • bacass Public Forked from nf-core/bacass

    Simple bacterial assembly and annotation pipeline

    BU-ISCIII/bacass’s past year of commit activity
    Nextflow 0 MIT 43 0 0 Updated Nov 6, 2024
  • virology_training Public

    This repo contains all the resources needed to follow the virology training to analyze viral sequencing data.

    BU-ISCIII/virology_training’s past year of commit activity
    HTML 4 3 0 0 Updated Nov 5, 2024
  • bacterial_wgs_training Public

    In this training course you will find theory and practice material for introducing yourself to wgs analysis for bacterial, including outbreak investigation.

    BU-ISCIII/bacterial_wgs_training’s past year of commit activity
    HTML 2 GPL-3.0 0 1 0 Updated Oct 31, 2024
  • viralrecon Public Forked from nf-core/viralrecon

    Assembly and intrahost/low-frequency variant calling for viral samples

    BU-ISCIII/viralrecon’s past year of commit activity
    Nextflow 0 MIT 113 0 0 Updated Oct 25, 2024
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