MIN Avoid deprecation warnings

BigDataBiology · Jun 27, 2024 · 5b120cd · 5b120cd
1 parent 76b2c60
commit 5b120cd
Show file tree

Hide file tree

Showing 2 changed files with 17 additions and 1 deletion.
diff --git a/example_seqs/pep8.faa b/example_seqs/pep8.faa
@@ -0,0 +1,16 @@
+>Query0
+KKVKSIFKKALAMMGENEVKAWGIGIK
+>Query1
+FFGIGQQEMTLEEIGDKFGLTRERVRQIKEKAIRRLRQSNRSKLLKSYLG
+>Query2
+KRVKSFFKGYMRAIEINAALMYGYRPK
+>Query3
+GRVIGKQGRIAKAIRVVMRAAAVRVDEKVLVEID
+>Query4
+KLRKILKSMFNNYCKTFKDVPPGNMFR
+>Query5
+AIFYVIKHISRKHFVSLQRYKIKEKM
+>Query6
+LVRIISMVIAGVIIVYLVRWIDNFFSRYRK
+>Query7
+HELOQFLTHIIFLLNLLKTLINHFS
diff --git a/macrel/main.py b/macrel/main.py
@@ -357,7 +357,7 @@ def do_ampsphere_query(args):
             if sys.stdout.isatty():
                 print('Note that to avoid overloading the AMPSphere API, this script will pause a bit after every query')
     results = pd.concat(results)
-    results['result'].fillna('No_Hit', inplace=True)
+    results.fillna({'result': 'No_Hit'}, inplace=True)
     ofile = (args.output_file if args.output_file != '-' else '/dev/stdout')
     if ofile is None:
         ofile = path.join(args.output,