Vamb

vamb/4.1.3/Dockerfile

@@ -0,0 +1,27 @@
+FROM --platform=linux/amd64 mambaorg/micromamba:1.5.1
+
+MAINTAINER biocontainers <biodocker@gmail.com>
+
+LABEL    software="vamb" \ 
+    base_image=" mambaorg/micromamba:1.5.1" \ 
+    container="vamb" \ 
+    about.summary="VAMB: Variational autoencoders for metagenomic binning" \ 
+    about.home="https://github.com/RasmussenLab/vamb" \ 
+    software.version="4.1.3" \ 
+    version="1" \
+    extra.identifiers.biotools="vamb" \ 
+    about.copyright="Rasmussen Group" \ 
+    about.license="MIT" \ 
+    about.license_file="https://github.com/RasmussenLab/vamb/blob/master/LICENSE" \ 
+    about.tags=""
+
+
+ARG MAMBA_DOCKERFILE_ACTIVATE=1
+ENV PATH=/opt/conda/bin:$PATH
+
+COPY --chown=$MAMBA_USER:$MAMBA_USER env_vamp.yaml /tmp/env_vamp.yaml
+
+RUN micromamba install -y -n base -f /tmp/env_vamp.yaml && \
+    micromamba clean --all --yes
+
+RUN pip install vamb==4.1.3

vamb/4.1.3/env_vamp.yaml

@@ -0,0 +1,10 @@
+name: base
+channels:
+    - conda-forge
+    - bioconda
+dependencies:
+    - python=3.10
+    - conda-forge::procps-ng=4.0.0
+    - git
+    - rust
+    - gcc