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Update version for Evidential Gene #548

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Update version for Evidential Gene #548

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e82c239
added Dockerfile for evigene
avani-bhojwani Jun 10, 2023
a634bc8
renamed directory
avani-bhojwani Jun 10, 2023
ea8a71d
changed name to lowercase
avani-bhojwani Jun 11, 2023
769f659
add new evigene version and fix path
avani-bhojwani Oct 10, 2023
7abc6db
Merge branch 'master' into master
avani-bhojwani Oct 10, 2023
7926b7b
deleted new version
avani-bhojwani Oct 10, 2023
dd80524
Merge branch 'master' of https://github.com/avani-bhojwani/containers
avani-bhojwani Oct 10, 2023
36bcd43
added new version of EvidentialGene
avani-bhojwani Nov 24, 2023
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74 changes: 37 additions & 37 deletions evidential-gene/22jan14/Dockerfile
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Original file line number Diff line number Diff line change
@@ -1,37 +1,37 @@
################## BASE IMAGE ######################
FROM biocontainers/biocontainers:v1.0.0_cv4

################## METADATA ######################
LABEL base_image="biocontainers:v1.0.0_cv4"
LABEL version="1"
LABEL software="evidential-gene"
LABEL software.version="22jan14"
LABEL about.summary="EvidentialGene is a genome informatics project for Evidence Directed Gene Construction for Eukaryotes"
LABEL about.home="http://arthropods.eugenes.org/EvidentialGene/evigene/"
LABEL about.documentation="http://arthropods.eugenes.org/EvidentialGene/evigene/docs/"
LABEL about.license_file="http://arthropods.eugenes.org/about/about-EvidentialGene/"
LABEL about.tags="Genomics, Transcriptomics"

################## MAINTAINER ######################
MAINTAINER Avani Bhojwani <[email protected]>

################## INSTALLATION ######################

USER 0

RUN apt-get update && apt-get upgrade -y && \
apt-get install -y perl cpanminus exonerate cd-hit ncbi-blast+ && \
wget -O EvidentialGene.tar http://arthropods.eugenes.org/EvidentialGene/other/evigene_old/evigene22jan14.tar && \
tar -xvf EvidentialGene.tar && rm EvidentialGene.tar && \
chmod +x evigene/scripts/*.pl && \
mv evigene /home/biodocker/bin/ && \
ln -s /usr/bin/cdhit /usr/bin/cd-hit && \
ln -s /usr/bin/cdhit-est /usr/bin/cd-hit-est && \
apt-get clean && \
rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*

ENV PATH="/home/biodocker/bin/evigene/scripts:/home/biodocker/bin/evigene/scripts/genoasm:/home/biodocker/bin/evigene/scripts/genes:/home/biodocker/bin/evigene/scripts/prot:/home/biodocker/bin/evigene/scripts/genes/evgpipe_scriptwork:/home/biodocker/bin/evigene/scripts/rnaseq:/home/biodocker/bin/evigene/scripts/omcl:/home/biodocker/bin/evigene/scripts/grid:/home/biodocker/bin/evigene/scripts/ests:${PATH}"

USER biodocker

WORKDIR /data/
################## BASE IMAGE ######################
FROM biocontainers/biocontainers:v1.0.0_cv4
################## METADATA ######################
LABEL base_image="biocontainers:v1.0.0_cv4"
LABEL version="2"
LABEL software="evidential-gene"
LABEL software.version="22jan14"
LABEL about.summary="EvidentialGene is a genome informatics project for Evidence Directed Gene Construction for Eukaryotes"
LABEL about.home="http://arthropods.eugenes.org/EvidentialGene/evigene/"
LABEL about.documentation="http://arthropods.eugenes.org/EvidentialGene/evigene/docs/"
LABEL about.license_file="http://arthropods.eugenes.org/about/about-EvidentialGene/"
LABEL about.tags="Genomics, Transcriptomics"
################## MAINTAINER ######################
MAINTAINER Avani Bhojwani <[email protected]>
################## INSTALLATION ######################
USER 0
RUN apt-get update && apt-get upgrade -y && \
apt-get install -y perl cpanminus exonerate cd-hit ncbi-blast+ && \
wget -O EvidentialGene.tar http://arthropods.eugenes.org/EvidentialGene/other/evigene_old/evigene_older/evigene22jan14.tar && \
tar -xvf EvidentialGene.tar && rm EvidentialGene.tar && \
chmod +x evigene/scripts/*.pl && \
mv evigene /opt/ && \
ln -s /usr/bin/cdhit /usr/bin/cd-hit && \
ln -s /usr/bin/cdhit-est /usr/bin/cd-hit-est && \
apt-get clean && \
rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
ENV PATH="/opt/evigene/scripts:/opt/evigene/scripts/genoasm:/opt/evigene/scripts/genes:/opt/evigene/scripts/prot:/opt/evigene/scripts/genes/evgpipe_scriptwork:/opt/evigene/scripts/rnaseq:/opt/evigene/scripts/omcl:/opt/evigene/scripts/grid:/opt/evigene/scripts/ests:${PATH}"
USER biodocker
WORKDIR /data/
35 changes: 35 additions & 0 deletions evidential-gene/23jul15/Dockerfile
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Original file line number Diff line number Diff line change
@@ -0,0 +1,35 @@
################## BASE IMAGE ######################
FROM biocontainers/biocontainers:v1.2.0_cv2

################## METADATA ######################
LABEL base_image="biocontainers:v1.2.0_cv2"
LABEL version="1"
LABEL software="evidential-gene"
LABEL software.version="23jul15"
LABEL about.summary="EvidentialGene is a genome informatics project for Evidence Directed Gene Construction for Eukaryotes"
LABEL about.home="http://arthropods.eugenes.org/EvidentialGene/evigene/"
LABEL about.documentation="http://arthropods.eugenes.org/EvidentialGene/evigene/docs/"
LABEL about.license_file="http://arthropods.eugenes.org/about/about-EvidentialGene/"
LABEL about.tags="Genomics, Transcriptomics"

################## MAINTAINER ######################
MAINTAINER Avani Bhojwani <[email protected]>

################## INSTALLATION ######################

USER 0

RUN apt-get update && apt-get upgrade -y && \
apt-get install -y perl cpanminus exonerate cd-hit ncbi-blast+ && \
wget -O EvidentialGene.tar http://arthropods.eugenes.org/EvidentialGene/other/evigene_old/evigene_older/evigene23jul15.tar && \
tar -xvf EvidentialGene.tar && rm EvidentialGene.tar && \
chmod +x evigene/scripts/*.pl && \
mv evigene /opt/ && \
apt-get clean && \
rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*

ENV PATH="/opt/evigene/scripts:/opt/evigene/scripts/genoasm:/opt/evigene/scripts/genes:/opt/evigene/scripts/prot:/opt/evigene/scripts/genes/evgpipe_scriptwork:/opt/evigene/scripts/rnaseq:/opt/evigene/scripts/omcl:/opt/evigene/scripts/grid:/opt/evigene/scripts/ests:${PATH}"

USER biodocker

WORKDIR /data/
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