Merge branch 'master' into mulled-v2-d3f5e27b29e668cbd8e459a1b683bf3d…

…17422a2f-3601955df5fbc579fa9ad20dcef37cb32466b1c1

.github/workflows/ci.yaml

@@ -23,7 +23,7 @@ jobs:
     - run: docker info
     - name: Build images
       run: |
-        mulled-build-files --check-published --singularity --namespace $MULLED_NAMESPACE --use-mamba  build-and-test ./combinations --verbose
+        mulled-build-files --check-published --singularity --namespace $MULLED_NAMESPACE build-and-test ./combinations --verbose
     - name: Upload images (if pushed to master branch)
       if: github.ref == 'refs/heads/master' && github.repository_owner == 'BioContainers'
       env:

README.md

@@ -24,6 +24,13 @@ conda create -n mulled galaxy-tool-util -c conda-forge -c bioconda
 conda activate mulled
 ```
 
+## Finding mulled hash names for containers
+
+```bash
+(planemo) bag@bag:~/projects/code/$ mulled-hash  r-shiny=1.8.1.1,bioconductor-phyloseq=1.46.0,r-curl=5.1.0,r-biocmanager=1.30.23
+mulled-v2-3f22c1adbbead1a8888120ab6f59758c0a05e86b:e77384d3aca3277e7caf46a60e0eb848aec72912
+```
+
 ## Searching for containers
 
 Multi-tool containers have hashed names to make them uniquely identifiable.
@@ -69,3 +76,32 @@ singularity  mulled-v2-eb9e7907c7a753917c1e4d7a64384c047429618a  e4be5f66213daef
  - Create quay.io oauth token in an organization.
  - Change the [MULLED_NAMESPACE variable](https://github.com/BioContainers/multi-package-containers/blob/master/.github/workflows/ci.yaml#L4) to point to your quay.io organization.
  - Add QUAY_OAUTH_TOKEN, MY_USER MY_PASSWORD and MY_EMAIL to the repository secrets.
+
+
+## Broader context
+
+[Bioconda](https://bioconda.github.io/) and [Conda-Forge](https://conda-forge.org/) are collaborative communities focused on creating and maintaining Conda recipes.
+These recipes facilitate the installation and management of scientific software,
+providing researchers and developers with streamlined workflows. Packages from both [Bioconda](https://bioconda.github.io/) and [Conda-Forge](https://conda-forge.org/)
+are hosted on [anaconda.org](https://anaconda.org/), a central repository that ensures reliable distribution.
+
+The process for managing these packages is highly automated. Both Bioconda and Conda-Forge build and upload pre-compiled packages directly to anaconda.org. Bioconda goes a step further by testing all packages in minimal containerized environments to verify their compatibility and reliability. These containerized versions of the packages are subsequently pushed to quay.io/biocontainers, creating a robust and accessible ecosystem of ready-to-use environments.
+
+For every package and every version within Bioconda, a corresponding pre-built container is available. This approach ensures that users have access to specific versions of tools in isolated and consistent environments.
+Additionally, the multi-package-containers repository builds containers that include multiple Conda packages in a single container, known as mulled containers.
+The naming convention for these containers relies on hashed package names and versions, providing unique identifiers for each.
+Docker containers are directly pushed to quay.io/biocontainers, while Singularity images are uploaded to depot.galaxyproject.org/singularity.
+
+To ensure seamless synchronization between these platforms, the [singularity-build-bot](https://github.com/BioContainers/singularity-build-bot) repository monitors quay.io for updates and uploads the corresponding containers
+to [depot.galaxyproject.org](https://depot.galaxyproject.org/singularity/).
+This ensures that all containers available on quay.io are also accessible via [depot.galaxyproject.org/singularity](https://depot.galaxyproject.org/singularity/).
+
+Singularity containers hosted on depot.galaxyproject.org are further mirrored and geographically distributed using the CernVM File System (CVMFS).
+This infrastructure optimizes access to containers globally, providing end-users with a reliable and efficient way to consume these resources.
+The CVMFS distribution model parallels the accessibility of [quay.io/biocontainers](https://quay.io/organization/biocontainers), ensuring that users can seamlessly integrate these resources into their workflows.
+
+![grafik](https://github.com/user-attachments/assets/d784c33f-aa92-47fa-a8fb-564f0cf69035)
+
+
+
+

combinations/apptainer-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+apptainer	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/astropy:5.2.2-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+astropy=5.2.2	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/biopython:1.73-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+biopython=1.73	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/biopython:1.79-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+biopython=1.79	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/chopin2:1.0.8.post1-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+chopin2=1.0.8.post1	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/chopin2:1.0.9.post1-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+chopin2=1.0.9.post1	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/cnv-vcf2json:1.1.0-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+cnv-vcf2json=1.1.0	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/copernicusmarine:1.3.3-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+copernicusmarine=1.3.3	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/galaxy-util:23.2.1-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+galaxy-util=23.2.1	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/gammapy:1.0-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+gammapy=1.0	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/graphicsmagick:1.3.43-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+graphicsmagick=1.3.43	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/graphicsmagick:1.3.44-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+graphicsmagick=1.3.44	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/graphicsmagick:1.3.45-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+graphicsmagick=1.3.45	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/hash.tsv

@@ -185,6 +185,7 @@ chromap=0.2.0,samtools=1.14
 chromap=0.2.1,samtools=1.15
 chromap=0.2.1,samtools=1.15.1
 chromap=0.2.1,samtools=1.16.1
+chromap=0.2.6,samtools=1.20
 bbmap=38.92,samtools=1.13
 bbmap=38.92,samtools=1.13,pigz=2.6
 bbmap=38.92,samtools=1.15.1,pigz=2.6
@@ -290,6 +291,7 @@ cnvkit=0.9.10,samtools=1.17
 cnvkit=0.9.10,samtools=1.19.2
 deeptools=3.5.1,samtools=1.15.1
 deeptools=3.5.1,samtools=1.16.1
+deeptools=3.5.5,samtools=1.20
 r-recetox-aplcms=0.9.4,r-base=4.1.0,r-arrow=4.0.1,r-dplyr=1.0.7	quay.io/bioconda/base-glibc-debian-bash:latest	0
 r-base=4.1.3,r-magrittr=2.0.3,r-dplyr=1.0.9,r-purrr=0.3.4,r-ggplot2=3.3.5,r-data.table=1.14.2
 samtools=1.15.1,bedtools=2.30.0,perl=5.32.1
@@ -319,7 +321,7 @@ svdb=2.8.1,samtools=1.16.1
 svdb=2.8.1,samtools=1.19.2
 r-base=4.1.2,changeo=1.2.0,r-alakazam=1.2.0,phylip=3.697,r-optparse=1.7.1
 ont-fast5-api=0.4.1,r-tailfindr=1.3.0
-gatk4=4.2.6.1,samtools=1.15.1,sambamba=0.8.2,bcftools=1.15.1,perl=5.32.1,r-base=4.1.2
+gatk4=4.2.6.1,samtools=1.15.1,sambamba=1.0.1,bcftools=1.15.1,perl=5.32.1,r-base=4.1.2
 bwa=0.7.17,prinseq-plus-plus=1.2.4,perl=5.26
 levenshtein=0.20.1
 pysam=0.19.1,edlib=1.3.9,tqdm=4.64.0
@@ -362,6 +364,7 @@ bbmap=38.98,seqkit=2.3.1,pigz=2.6
 r-base=4.1.3,r-argparse=2.1.3,r-data.table=1.14.2
 gatk4=4.3.0.0,gatktool=0.0.1
 fgbio=2.0.2,bwa=0.7.17,samtools=1.16.1
+fgbio=2.2.1,bwa-mem2=2.2.1,samtools=1.20
 wham=1.8.0,tabix=1.11
 aria2=1.36.0,rsync=3.2.7
 numpy=1.20.3,pandas=1.2.5,scipy=1.4.1,matplotlib=3.5.1
@@ -398,6 +401,7 @@ r-tidyverse=1.3.1,r-data.table=1.14.6,r-caret=6.0_93,r-rjson=0.2.21,r-furrr=0.3.
 python=3.9,biopython=1.79,pandas=1.5.3,pandarallel=1.6.4
 enasearch=0.1.1	quay.io/bioconda/base-glibc-debian-bash:latest	1
 jbrowse2=2.10.0,biopython=1.82,bcbio-gff=0.7.0,samtools=1.19,pyyaml=6.0.1,tabix=1.11,findutils=4.6.0	bioconda/base-glibc-busybox-bash-fake-user:3.0	0
+jbrowse2=2.11.1,biopython=1.82,bcbio-gff=0.7.1,samtools=1.19,pyyaml=6.0.1,tabix=1.11,findutils=4.6.0,hictk=0.0.12-0,zip=3.0	bioconda/base-glibc-busybox-bash-fake-user:3.0	0
 bioconductor-scater=1.26.0,bioconductor-deseq2=1.38.0,bioconductor-limma=3.54.0,r-ashr=2.2_54,r-pheatmap=1.0.12
 rmats=4.1.2,r-pairadise=1.0.0
 bedtools=2.30.0,biopython=1.79,circos=0.69.8,coreutils=9.1,gawk=5.1.0,numpy=1.23.5,pandas=1.5.3
@@ -437,7 +441,9 @@ r-ggplot2=3.4.2,r-data.table=1.14.8,r-dplyr=1.1.2,r-stringr=1.5.0,r-ggpubr=0.6.0
 minimap2=2.26,samtools=1.17
 r-tidyverse=2.0.0,r-knitr=1.43,r-dt=0.28,r-formattable=0.2.1,r-purrr=1.0.1,r-vegan=2.6_4,r-rmarkdown=2.22,r-optparse=1.7.3,r-ggplot2=3.4.2,r-dplyr=1.1.2,r-data.table=1.14.8,r-base=4.2.3,r-dtplyr=1.3.1,r-patchwork=1.1.2	quay.io/bioconda/base-glibc-debian-bash:latest	1
 r-propr=4.2.6
-r-propr=5.0.3
+r-propr=5.0.4
+r-propr=5.1.2,bioconductor-limma=3.58.1
+r-propr=5.1.4,bioconductor-limma=3.58.1
 bedtools=2.27.0,samtools=1.2	quay.io/bioconda/base-glibc-busybox-bash:latest	1
 minimap2=2.26,racon=1.5.0
 python=3.10,biopython=1.80,pandas=1.5.3,rich=12.6.0,typer=0.7.0,numpy=1.24.2,edlib=1.3.9
@@ -467,7 +473,7 @@ bedtools=2.31.0,samtools=1.17,ucsc-wigtobigwig=447
 r-base=4.0.2,vcftools=0.1.14-0
 perl==5.26.2,perl-sort-key=1.33,perl-yaml-libyaml=0.88
 tophat=2.1.1,samtools=1.17
-perl=5.26.2,r=3.6.0,bcftools=1.13,bedtools=2.30.0,bc=1.07.1,grep
+perl=5.26.2,r=3.6.0,bcftools=1.13,bedtools=2.30.0,bc=1.07.1,grep,coreutils=9.5
 python=3.7.9,pandas=1.3.4,numpy=1.21.4,pyranges=0.0.115,fire=0.4.0
 python=3.6.15,matplotlib=3.3.4,numpy=1.19.5,pyvcf=0.6.8,pysam=0.15.4,htslib=1.9
 r-base=3.5,bioconductor-htqpcr=1.36.0,bioconductor-rankprod=3.8.0,bioconductor-impute=1.56.0,r-bbmisc=1.11.0,r-psych=1.8.4,r-zoo=1.8_3,bioconductor-normqpcr=1.28.0,r-rgl=0.99.16
@@ -546,7 +552,7 @@ pyrodigal=3.3.0,pigz=2.6
 kraken2=2.1.3,gnu-coreutils=9.4
 macs2=2.2.9.1,mawk=1.3.4
 kraken2=2.1.3,coreutils=9.4
-bwa=0.7.17,samtools=1.19.2,sambamba=1.0
+bwa=0.7.17,samtools=1.19.2,sambamba=1.0.1
 optitype=1.3.5,coincbc=2.10.0
 python=3.11.0,requests=2.31.0,biopython=1.83.0
 r-hwriter=1.3.2,r-ggplot2=3.4.4,r-ini=0.3.1,r-ashr=2.2_63,r-dplyr=1.1.4,r-ggrepel=0.9.5,r-png=0.1_8,bioconductor-reportingtools=2.42.2,bioconductor-deseq2=1.42.0,bioconductor-complexheatmap=2.18.0,bioconductor-tximport=1.30.0
@@ -562,6 +568,61 @@ r-base=4.3,r-catboost=1.2,r-ABCanalysis=1.2,r-C50=0.1.8,r-caret=6.0,r-data.table
 picard=3.1.1,samtools=1.19.2
 bedtools=2.31.1,ucsc-bedgraphtobigwig=445,samtools=1.16.1
 star=2.7.11b,samtools=1.19.2,mawk=1.3.4
-bwa-mem2=2.2.1,samtools=1.19.2,sambamba=1.0
+star=2.7.11b,samtools=1.21,htslib=1.21,gawk=5.3.0
+bwa-mem2=2.2.1,samtools=1.19.2,sambamba=1.0.1
+decoupler-py=1.6.0,pandas=2.2.1
 crabz=0.9.0
+panphlan=3.1,bzip2=1.0.8
 r-tidyverse=2.0.0,r-base=4.3.3,r-seurat=5.0.1,bioconductor-dropletutils=1.22.0,r-pdftools=3.4.0,r-magick=2.8.3,bioconductor-preprocesscore=1.64.0,r-devtools=2.4.5,r-data.table=1.15.2,r-ggplot2=3.5.0,r-cowplot=1.1.3,r-here=1.0.1,r-argparse=2.2.2,r-dplyr=1.1.4,bioconductor-demuxmix=1.4.0
+mosdepth=0.3.7,samtools=1.19.2
+snpeff=5.2,tabix=1.11
+squidpy=1.5.0
+magus-msa=0.2.0,pigz=2.8
+fgbio=2.0.2,r-ggplot2=3.4
+r-base=4.3.3,bioconductor-rtracklayer=1.62.0,r-optparse=1.7.4,r-dplyr=1.1.4,r-stringr=1.5.1,r-plyr=1.8.9,r-data.table=1.15.2,coreutils=9.5,r-argparse=2.2.2
+kraken2=2.1.3,coreutils=9.4,pigz=2.8
+minimap2=2.28,samtools=1.20
+bedtools=2.31.1,samtools=1.19.2,perl=5.32.1
+bedtools=2.31.1,samtools=1.19.2,python=3.11.4
+r-base=4.2.1,r-proteus-bartongroup=0.2.16,bioconductor-limma=3.54.0,r-plotly=4.10.2,r-ggplot2=3.4.4
+segalign-full=0.1.2.1,bashlex=0.18
+r-base=4.3,r-dartr,r-pophelper,r-reshape2,r-vcfr
+bwa=0.7.18,samtools=1.20,sambamba=1.0.1
+kma=1.4.14,samtools=1.20
+kma=1.4.9,samtools=1.20
+bwa-meme=1.0.6,mbuffer=20160228,samtools=1.20
+cellpose=3.0.8	quay.io/bioconda/base-glibc-debian-bash:latest	0
+cellpose=3.0.9	quay.io/bioconda/base-glibc-debian-bash:latest	0
+cellpose=3.0.10	quay.io/bioconda/base-glibc-debian-bash:latest	0
+paraphase=3.1.1,minimap2=2.28,samtools=1.20
+bowtie2=2.5.4,samtools=1.20
+vardict-java=1.8.3,htslib=1.4.1
+pyopenms=2.9.1,h5py=3.9.0
+plant-seg=1.8.1,pytorch=2.3.1,bioimageio.spec=0.5.3,pyyaml=6.0.1	quay.io/bioconda/base-glibc-debian-bash:latest	0
+groot=1.1.2	quay.io/bioconda/base-glibc-debian-bash:latest	1
+r-shiny=1.8.1.1,bioconductor-phyloseq=1.46.0,r-curl=5.1.0,r-biocmanager=1.30.23
+vardict-java=1.8.3,htslib=1.20
+lumpy-sv=0.3.1	quay.io/bioconda/base-glibc-busybox-bash:3.1	3
+bwameth=0.2.7,bwa-mem2=2.2.1
+pasta=1.9.0,pigz=2.8
+longphase=1.7.3,htslib=1.20
+r-base=4.4.1,r-igraph=2.0.3,r-dplyr=1.1.4,r-tidyr=1.3.1,r-readr=2.1.5,r-ggplot2=3.5.1
+telseq=0.0.2,samtools=1.20
+star=2.7.10a,samtools=1.18,htslib=1.18
+pandas=2.2.2,matplotlib=3.9.2,seaborn=0.13.2,tqdm=4.66.5,statsmodels=0.14.2,numpy=1.26.4,scipy=1.13.1
+minimap2=2.26,samtools=1.18,htslib=1.18
+julia=1.10
+r-seqinr=4.2_36,r-digest=0.6.37,r-rlist=0.4.6.2,r-tiledb=0.30.0
+r-seqinr=4.2_36,r-digest=0.6.37,r-rlist=0.4.6.2,r-tiledb=0.30.0,bioconductor-biocgenerics=0.48.1,bioconductor-biostrings=2.70.1,r-optparse=1.7.5,r-rmarkdown=2.28
+r-pafr=0.0.2,r-viridislite=0.4.2,r-data.table=1.15.4,r-yaml=2.3.10,r-ggplot2=3.5.1,r-gtools=3.9.5
+mechanize=0.2.5
+svdb=2.8.2,bcftools=1.21
+filesendercli=3.0.0
+python=3.9,bcftools=1.21,samtools=1.21
+pyrodigal=3.6.3,pigz=2.8
+mash=2.3,numpy=2.1.3,tqdm=4.67.1
+cobra=0.29.1,pandas=2.2.3,memote=0.17.0,escher=1.7.3
+curl=8.10.1,xmlstarlet=1.6.1,imagemagick=7.1.1_41,ghostscript=10.04.0,fonts-conda-forge=1
+bioconductor-phyloseq==1.46.0,r-tidyverse=1.3.1
+r-optparse,r-rcolorbrewer,r-paralleldist,r-matrix,r-readr,r-here,r-circlize,bioconductor-complexheatmap,r-scevan
+tabpfn=2.0.3

combinations/mudirac:1.0.1-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+mudirac=1.0.1	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/mulled-v2-001dbe154de01fc0a59ac6b7e13d0296d7391119:30f53c0611cf23cfa6dff7951e9ab7d27b758bc6-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+r-rmysql=0.10.27,bioconductor-mspuritydata=1.30.0,r-rpostgres=1.4.7,r-optparse=1.7.5,bioconductor-xcms=4.0.0,bioconductor-mspurity=1.28.0,bioconductor-camera=1.58.0	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/mulled-v2-00c2a9635abf85d2d10e421b05b7eb42580bde68:a0fb561075bde70eee3b52df4c8a74334f44a4c1-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+tb-profiler=6.4.0,delly=1.2.6	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/mulled-v2-01023c27ff0dac92bb638ea16195dce5be06409e:a9a883584aa3d8a716fd62b28db6b09c2aae8c50-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+pandas=2.2.2,fa2=0.3.5,magic-impute=3.0.0,anndata=0.10.3,scipy=1.14.1,numpy=1.26.4,statsmodels=0.14.2,scanpy=1.10.2	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/mulled-v2-016582a5c0fc56b4b694339dce5194cd4a2a6370:5d99c1726af98feabf826582a5ae5f69d617b5e2-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+scipy=1.11.4,wget=1.21.4,matplotlib=3.8.4,pydantic=1.10.14,tqdm=4.66.2,nbconvert=7.16.3,oda-api=1.2.15,ipython=8.22.2,gammapy=1.1,astropy=5.3.4	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/mulled-v2-02428be6bbdaf21a20c96b44171494d52847994e:24f8b889d3633f174dc413b7b92ffa5fc32470cf-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+openjdk=21.0.2,omero-py=5.18.0	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/mulled-v2-027f30e88c6da4ab4b0170ff590dbab158b07243:43ff19c348e21674cd51004463f1ea0b2e5f2336-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+fasta3=36.3.8,mafft=7.526	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/mulled-v2-055a5ee1e3feb1148c41090361d88ac80c78a931:2fa395b2e677baf75b36c8f8085605b62adb8b2c-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+r-recetox-aplcms=0.13.4,pymzml=2.5.2	quay.io/bioconda/base-glibc-debian-bash:latest	0

combinations/mulled-v2-055a5ee1e3feb1148c41090361d88ac80c78a931:364ae214ea51e0a2876ce0efc9971d16da2e8cf2-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+pymzml=2.5.2,r-recetox-aplcms=0.13.3	quay.io/bioconda/base-glibc-debian-bash:latest	0

combinations/mulled-v2-055a5ee1e3feb1148c41090361d88ac80c78a931:5ba43d8885a0acb8915128ed96940311a26847c7-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+pymzml=2.5.2,r-recetox-aplcms=0.13.2	quay.io/bioconda/base-glibc-debian-bash:latest	0

combinations/mulled-v2-058593ade93b12389c2fef93c2b1ca0cdeee1113:da5ebca9afe6c91fd3c0909f6a8f8d3dee4236e4-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+r-maldiquantforeign=0.14.1,r-scales=1.3.0,r-maldiquant=1.22.2,r-gridextra=2.3,r-randomcolor=1.1.0.1,r-ggplot2=3.5.1,r-rcolorbrewer=1.1_3,r-pheatmap=1.0.12,r-kernsmooth=2.23_24,bioconductor-sva=3.50.0,bioconductor-cardinal=3.4.3	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/mulled-v2-05cf43442a9cbaa9f9bd04c1ce69c6825753af93:278925ddb2e0c41bb8fb9c63af79f8a32fe80901-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+tifffile=2021.7.2,scikit-image=0.18.3,giatools=0.1,numpy=1.24.4,pillow=10.0.1	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/mulled-v2-077b852b8b5440d395ad23f9f24f50c943390a84:d3e6e56ef6344526b663f4ef252b1a67652d3eab-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+ucsc-bigwigtobedgraph=377,pretextgraph=0.0.7	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/mulled-v2-085184fb5cc473383b88b71a2a31a7cf4332864c:785af8aa735e847dc2f997dfd8149ed97a1e6a48-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+scikit-image=0.24.0,pillow=11.0.0,numpy=2.1.2,tifffile=2024.9.20,scikit-learn=1.5.2	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/mulled-v2-0c37e2cabbea75a32163b1262c3dc18ab9d7600e:13cb094652ca3545f1222369061ebe2902cd22a3-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+abyss=2.3.10,bwa=0.7.18	quay.io/bioconda/base-glibc-debian-bash:latest	0

combinations/mulled-v2-0c37e2cabbea75a32163b1262c3dc18ab9d7600e:bc2cf46822f57b1461e908b5d8b487535203ecfa-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+abyss=2.3.9,bwa=0.7.18	quay.io/bioconda/base-glibc-debian-bash:latest	0

combinations/mulled-v2-0ce81b0672b34c2cb41c8710f4b31136f1a9fa46:569801f25ac4b9903cc97a107fce58a45f7b8a3a-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+gzip=1.13,mosdepth=0.3.10	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/mulled-v2-0ce81b0672b34c2cb41c8710f4b31136f1a9fa46:a463922e8d5f63c492ba8a0e8bfb79ebebe5a051-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+mosdepth=0.3.7,gzip=1.13	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/mulled-v2-0ce81b0672b34c2cb41c8710f4b31136f1a9fa46:b840dab9bb1c96cd16a035653a2cc47a903ae322-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+mosdepth=0.3.8,gzip=1.13	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/mulled-v2-0cf2748ad115082bb43c94fa6543efe22832eb80:5d1c3833e2c002e615711c0eb3bcf72f28416697-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+python=3.8.3,picard=1.56.0,samtools=0.1.18	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/mulled-v2-10e67826a934a9099f4e9dc612671cb555fd16eb:c1a5e1187c9f8950c1e81f8c29e803564374ef91-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+unzip=6.0,xraylarch=0.9.81,numpy=1.26.4	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/mulled-v2-12d331eccbc7161dd3deb559bf75270b926f0e91:324947533e7bd7b7ec3dcf9f2b78f33557c8c85e-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+hicstuff=3.2.3,cooler=0.10.2,biopython=1.84	quay.io/bioconda/base-glibc-debian-bash:latest	0

combinations/mulled-v2-12d331eccbc7161dd3deb559bf75270b926f0e91:c34272f3efd623dcefb153ede57a0914c0468d3c-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+biopython=1.80,cooler=0.10.2,hicstuff=3.1.5	quay.io/bioconda/base-glibc-debian-bash:latest	0

combinations/mulled-v2-12f89f6aa51aca9d79a6e704ba7eeab231e53671:a32944906fa8dc652ab92bc8cd09c1bdc13f3f6f-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+sed=4.8,diffutils=3.10	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/mulled-v2-12fced2530e0a51de91b029c85af463cedb62bee:8b255fc4d8ca8c1e1dbf4f41a9f274c2eaa17cc9-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+samtools=1.20,unicycler=0.5.1	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/mulled-v2-13689448941d2fa411fb434d22e02e348bcc7f30:2808f9c6fa509fa6f3cea7ab758e7eb872f609f0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+bioconductor-metams=1.24.0,r-batch=1.1_5	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/mulled-v2-13689448941d2fa411fb434d22e02e348bcc7f30:fa09b672084a28f4cb59a723f505489cccc2af7f.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+bioconductor-metams=1.18.1,r-batch=1.1_4	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/mulled-v2-143e618e2d6eef454186ce14739a2cabc5ecf645:8b4e203e52e94910beba264e49503d4250155db9-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+kallisto=0.46.2,samtools=1.9	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/mulled-v2-1677ea7a1ef8d879fdebe3be1167fb4d31923fb3:d4dc61a1a2164174edc1a6ff30d1e65c3282fd85-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+loompy=3.0.6,numpy=1.26.4,anndata=0.10.9	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/mulled-v2-17bee98254312feea8324cad0f703d137d716132:45c657e542c88c3d508d219160e6345ab831d3ad-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+r-getopt=1.20.4,bioconductor-cemitool=1.26.0,r-ggplot2=3.5.1	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/mulled-v2-182ca4e22498006e87b5e934f6b8369292950120:12e783615ea306e04c5248fc2c9725232ba13b4c-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+requests=2.32.3,reportlab=4.1.0,pyaml=24.4.0,pytz=2024.1	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/mulled-v2-18b619b415d9ff69d3a7bacbbb7b09f45ba1a215:f3370f24695c57921a5f15b5625c16e2df7f9cea-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+coreutils=9.5,tar=1.34,findutils=4.6.0,merqury=1.3	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/mulled-v2-1969271ffece8920441ded0a2410f8218b13d934:5c10a5620e4a5ff0a946d9c97874e0a44a243985-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+numpy=1.23.3,scikit-image=0.18.1,tifffile=2020.10.1,giatools=0.1,pandas=2.2.2	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/mulled-v2-1969271ffece8920441ded0a2410f8218b13d934:93c9bda435e9e48561e0e187d09141916753fa73-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+pandas=1.2.4,numpy=1.26.4,scikit-image=0.21,giatools=0.3.1,tifffile=2024.6.18	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/mulled-v2-1969271ffece8920441ded0a2410f8218b13d934:d06fc1f22d7d914ee5752659b49114ff2ecf7a0f-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+giatools=0.2.0,pandas=1.2.4,numpy=1.26.4,scikit-image=0.21,tifffile=2024.6.18	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/mulled-v2-1aad242d5f1d2e9dfa491dd17a85e1417a2b2d64:ea2ca4ef1f5c792cffaa9a23dc0a8f74aab39a98-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+samtools=1.19,hicexplorer=3.7.5	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/mulled-v2-1ce5e37334bc909572dbf75a7a943be7577d6ae9:35bfb2b41e467943573586c964d41936d97d477a-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+pyvo=1.4.1,astropy=5.2.2	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/mulled-v2-2104de94fc3275c05faf3d41165a700b6e0c9ef9:4eaf25c5eadecd9f8fbdef66e48da7968d87a0ec-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+biopython=1.84,snpeff=5.2	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/mulled-v2-21b0c588b40a2ac04b248fdac276ac006fecf992:daae02d25acd7e4d71829ba88a0a4a8b20ca1a51-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+ca-certificates=2024.2.2,ncbi-datasets-cli=16.20.0,p7zip=16.02	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/mulled-v2-23c318ae7fed5ca4cc4e59b7c0da2e2a5a34009f:50ab68ba10d46709b933a6eb7c8c675a855272ac-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+irma=1.2.0,python=3.12	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/mulled-v2-246fc669eb0142dd62cf0f0ec4b761254a70ce2c:904c83c0b2a930c7755376460737fea99b050c23-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+sambamba=1.0.1,samblaster=0.1.26	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/mulled-v2-26583c1e86681aa6c5c517a2bf9c9c54aaedcde6:a25cf5282cc7c9ead800e7a856672df6e4631a1c-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+julia-divand=2.7.9,julia=1.8.5	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/mulled-v2-27fa4b32e71813fff6e1a10b01866abba2fc4c6d:4ab5ef7e7fecabca366d95a706cf908cafe21f68-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+samtools=1.21,subread=2.0.8	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/mulled-v2-27fa4b32e71813fff6e1a10b01866abba2fc4c6d:c6e2bf273a7244984b301c7a54fe250b10f76b65-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+subread=2.0.0,samtools=1.10	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/mulled-v2-27fa4b32e71813fff6e1a10b01866abba2fc4c6d:d2c9084da1e6388973f20cd5d2839fad19105fbb-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+samtools=1.21,subread=2.0.6	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/mulled-v2-28021a96b7c1ebebbaa6891a5241ba0983671929:bd7d2995506cab179bbca4badd8ee7486b5d5f37-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+ctdopts=1.5,openms=3.1,blast=2.14.1,openms-thirdparty=3.1	quay.io/bioconda/base-glibc-busybox-bash:latest	0

combinations/mulled-v2-291d230364dc586f82da0be8fc0711e98a26e5b1:e0fc4abd171c4fb44adf451fa4b502e1bc03a196-0.tsv

@@ -0,0 +1,2 @@
+#targets	base_image	image_build
+python=3.12.3,coreutils=9.5,ucsc-bedgraphtobigwig=455,bedtools=2.31.1	quay.io/bioconda/base-glibc-busybox-bash:latest	0