Update BioMarkovChains documentation

docs/src/biomarkovchains.md

@@ -163,39 +163,6 @@ BioMarkovChain(sequence, 2)
       - Markov Chain Order -> Int64:
        2
 
-## The *log-odds ratio* decision rule
-
-The sequence probability given a transition probability model (eq. 2)
-could be used as the source of a sequence classification based on a
-decision rule to classify whether a sequence correspond to a model or
-another. Now, imagine we got two DNA sequence transition models, a CDS
-model and a No-CDS model. The *log-odds ratio* decision rule could be
-establish as:
-
-``` math
-\begin{align}
-S(X) = \log \frac{{P_C(X_1=i_1, \ldots, X_T=i_T)}}{{P_N(X_1=i_1, \ldots, X_T=i_T)}}  \begin{cases} > \eta & \Rightarrow \text{coding} \\ < \eta & \Rightarrow \text{noncoding} \end{cases}
-\end{align}
-```
-
-Where the ``P_{C}`` is the probability of the sequence given a
-CDS model, ``P_{N}`` is the probability of the sequence given a
-No-CDS model, the decision rule is finally based on whether the ratio is
-greater or lesser than a given threshold *η* of significance level.
-
-In the GeneFinder we have implemented this rule and a couple of basic
-transition probability models of CDS and No-CDS of *E. coli* from
-Axelson-Fisk (2015) work. To check whether a random sequence could be
-coding based on these decision we use the predicate `iscoding` with the
-`ECOLICDS` and `ECOLINOCDS` models:
-
-``` julia
-randseq = getorfdna(randdnaseq(99))[1] # this will retrieved a random coding ORF
-
-iscoding(randseq, ECOLICDS, ECOLINOCDS)
-```
-
-    true
 
 ## References
 

docs/src/index.md

@@ -1,3 +1,5 @@
+# BioMarkovChains
+
 ```@raw html
 
 <p align="center">
@@ -6,10 +8,28 @@
 </p>
 ```
 
-# BioMarkovChains
+```@raw html
+
+<div style="text-align: center;">
+
+<a href="https://camilogarciabotero.github.io/BioMarkovChains.jl/dev/"><img src="https://img.shields.io/badge/documentation-online-blue.svg?logo=Julia&logoColor=white" alt="Documentation"></a>
+<a href="https://github.com/camilogarciabotero/BioMarkovChains.jl/releases/latest"><img src="https://img.shields.io/github/release/camilogarciabotero/BioMarkovChains.jl.svg" alt="Latest Release"></a>
+<a href="https://zenodo.org/badge/latestdoi/665161607"><img src="https://zenodo.org/badge/665161607.svg" alt="DOI"></a>
+<br/>
+<a href="https://github.com/camilogarciabotero/BioMarkovChains.jl/actions/workflows/CI.yml"><img src="https://github.com/camilogarciabotero/BioMarkovChains.jl/actions/workflows/CI.yml/badge.svg" alt="CI Workflow"></a>
+<a href="https://github.com/camilogarciabotero/BioMarkovChains.jl/blob/main/LICENSE"><img src="https://img.shields.io/badge/license-MIT-green.svg" alt="License"></a>
+<a href="https://www.repostatus.org/#wip"><img src="https://www.repostatus.org/badges/latest/wip.svg" alt="Work in Progress"></a>
+<a href="https://pkgs.genieframework.com?packages=BioMarkovChains"><img src="https://shields.io/endpoint?url=https://pkgs.genieframework.com/api/v1/badge/BioMarkovChains&label=downloads" alt="Downloads"></a>
+
+</div>
+
+```
+
 
 Documentation for [BioMarkovChains](https://github.com/camilogarciabotero/BioMarkovChains.jl).
 
+
+
 ***
 ## Overview