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Bumb version and update changelog
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camilogarciabotero committed Nov 5, 2023
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33 changes: 19 additions & 14 deletions CHANGELOG.md
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Expand Up @@ -6,41 +6,46 @@ The format is based on Keep a Changelog and this project adheres to Semantic Ver

## [UNRELEASED](https://github.com/camilogarciabotero/GeneFinder.jl/compare/v0.0.10...main)

## [0.7.0]

- Improve `BioMarkoChain` struct to be more flexible and distinguish DNA, RNA, AminoAcid #17

## [0.6.0]

- Update docs version to `1.0`
- Update docs logo
- Add new methods for to calculate the log-odds ratio of a sequence and a model (#)
- Extend new methods from the booleans/predicates of `DiscreteMarkovChains.jl` package
- Clean code and make it more lightweight by using weakdeps
- Update docs version to `1.0`.
- Update docs logo.
- Add new methods for to calculate the log-odds ratio of a sequence and a model.
- Extend new methods from the booleans/predicates of `DiscreteMarkovChains.jl` package.
- Clean code and make it more lightweight by using weakdeps.

## [0.5.0]

- Improve count of transitions 10X thanks to `VectorizedKmers.jl`
- Improve count of transitions 10X thanks to `VectorizedKmers.jl`.

## [0.4.1]

- Internals changes, clean code and make it more flexible
- Internals changes, clean code and make it more flexible.

## [0.4.0]

- Clean documentation
- Add a `randbmc` methods
- Improve `BMC` printing
- Clean documentation.
- Add a `randbmc` methods.
- Improve `BMC` printing.

## [0.3.0]

- Refactoring the `TransitionModel` to a `BioMarkovChain` construct and better interface
- Refactoring the `TransitionModel` to a `BioMarkovChain` construct and better interface.

## [0.2.0]

- Exapanding the alphabets to RNA and AA to its Markov chains.
- Improving runtime and allocations
- Refacotring and renaming of internal functions
- Improving runtime and allocations.
- Refacotring and renaming of internal functions.

## [0.1.X]

- This version has some clean ups and a new faster version of `dinucleotides` counts thanks to @gdalle. See [here the discussion](https://discourse.julialang.org/t/optimizing-dinucleotides-count-in-a-dna-sequence-type-longdna/101583/4?u=camilogarciabotero)
- This version has some clean ups and a new faster version of `dinucleotides` counts thanks to @gdalle. See [here the discussion](https://discourse.julialang.org/t/optimizing-dinucleotides-count-in-a-dna-sequence-type-longdna/101583/4?u=camilogarciabotero).

## [0.1.0]

- First release of `BioMarkovChains`
2 changes: 1 addition & 1 deletion Project.toml
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name = "BioMarkovChains"
uuid = "f861b655-cb5f-42ce-b66a-341b542d4f2c"
authors = ["Camilo García-Botero<[email protected]>"]
version = "0.6.0"
version = "0.7.0"

[deps]
BioSequences = "7e6ae17a-c86d-528c-b3b9-7f778a29fe59"
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Registration pull request created: JuliaRegistries/General/94761

After the above pull request is merged, it is recommended that a tag is created on this repository for the registered package version.

This will be done automatically if the Julia TagBot GitHub Action is installed, or can be done manually through the github interface, or via:

git tag -a v0.7.0 -m "<description of version>" 8feb3716ce0ca041164c30f5b9fe78aca8bab196
git push origin v0.7.0

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