[pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

src/rds2py/granges.py

@@ -47,7 +47,9 @@ def as_granges(robj):
         genome=_seqinfo_genome,
     )
 
-    _mcols = BiocFrame.from_pandas(as_pandas_from_dframe(robj["attributes"]["elementMetadata"]))
+    _mcols = BiocFrame.from_pandas(
+        as_pandas_from_dframe(robj["attributes"]["elementMetadata"])
+    )
 
     _gr_names = None
     if "NAMES" in robj["attributes"]:
@@ -73,7 +75,7 @@ def _as_list(robj):
     if "attributes" in _attr_vals["values"]:
         if "levels" in _attr_vals["values"]["attributes"]:
             _levels_data = _attr_vals["values"]["attributes"]["levels"]["data"]
-            _data = [_levels_data[x-1] for x in _data]
+            _data = [_levels_data[x - 1] for x in _data]
 
     if "lengths" in _attr_vals:
         _final = []

src/rds2py/interface.py

@@ -255,4 +255,4 @@ def as_summarized_experiment(robj):
     else:
         raise TypeError(
             "`robj` is neither a `SummarizedExperiment` nor `SingleCellExperiment`."
-        )
+        )

tests/data/generate_files.R

@@ -105,4 +105,4 @@ gr <- GRanges(
     score = 1:10,
     GC = seq(1, 0, length=10))
 
-saveRDS(gr, file="granges.rds")
+saveRDS(gr, file="granges.rds")

tests/test_granges.py

@@ -15,4 +15,4 @@ def test_granges():
 
     gr = as_granges(robj=robj)
 
-    assert isinstance(gr, GenomicRanges)
+    assert isinstance(gr, GenomicRanges)