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@BioinformaticsMUSC

Bioinformatics at MUSC

Bioinformatic Core at the Medical University of South Carolina

The Bioinformatic Core at MUSC

About Bioinformatics Core

The Bioinformatic Core at MUSC (BioCM) provides an extensive range of bioinformatics data analysis services to MUSC faculties, biotech/pharmaceutical companies, and research organisations.

The BioCM services are designed to provide bioinformatic solutions and acquire data for a broad range of applications including metagenomics, cancer genomics, microbial genomics, non-model system genomics, transcriptomics, epigenomics, and the most advances single cell multiomics. Our skilled data analysis group can help to move your bioinformatics research project forward in a number of ways, and we have the experience to assist you at every step of the process

The Vision

The BioCM strives to accomplish this mission by maintaining a skilled staff and state-of-the-art equipment, and by providing cost-effective services ranging from consultation to data generation and processing. We gladly provide investigators biostatistical, bioinformatic, and sequencing consultation services to guide researchers towards the effective design, execution, and analysis of their studies and research questions. We further offer support to researchers at the pre-proposal phase to help researchers win competitive grant funding and at the manuscript phase in method writing and data visualization.

Popular repositories Loading

  1. scToppR scToppR Public

    An API wrapper for ToppGene

    R 4

  2. biocm-scripts biocm-scripts Public

    Collection of biocm-tools for scRNAseq analysis

    R 1

  3. ShinyCellPlus ShinyCellPlus Public

    Modification of R package ShinyCell

    R 1 1

  4. PryceEtAl_Cachexia PryceEtAl_Cachexia Public

    scRNAseq Data Analysis Code

    R 1

  5. PiccirilloLabEtAl_Glioblastoma PiccirilloLabEtAl_Glioblastoma Public

    The Tumor Microenvironment Analysis of Human Glioblastoma and the Sub-Ventricular Zone

    R 1 1

  6. .github .github Public

Repositories

Showing 10 of 21 repositories
  • ShinyCellPlus Public

    Modification of R package ShinyCell

    BioinformaticsMUSC/ShinyCellPlus’s past year of commit activity
    R 1 GPL-3.0 1 0 0 Updated Jan 21, 2025
  • scToppR Public

    An API wrapper for ToppGene

    BioinformaticsMUSC/scToppR’s past year of commit activity
    R 4 MIT 0 1 0 Updated Dec 10, 2024
  • PiccirilloLabEtAl_Glioblastoma Public

    The Tumor Microenvironment Analysis of Human Glioblastoma and the Sub-Ventricular Zone

    BioinformaticsMUSC/PiccirilloLabEtAl_Glioblastoma’s past year of commit activity
    R 1 1 0 0 Updated Nov 20, 2024
  • Ferreira_High_Affinity_CAR_Treg Public

    Code used in analysis for the paper "High affinity chimeric antigen receptor signaling induces an inflammatory program in human regulatory T cells"

    BioinformaticsMUSC/Ferreira_High_Affinity_CAR_Treg’s past year of commit activity
    0 0 0 0 Updated Nov 19, 2024
  • BioinformaticsMUSC/AD_Aging_Transcriptomic’s past year of commit activity
    R 0 0 0 0 Updated Sep 12, 2024
  • biocmtools Public
    BioinformaticsMUSC/biocmtools’s past year of commit activity
    R 0 0 0 0 Updated Jul 9, 2024
  • BioinformaticsMUSC/HughesEtAl_Npas4Cocaine’s past year of commit activity
    R 0 0 0 0 Updated May 23, 2024
  • BioinformaticsMUSC/ChoEtAl_SingleCell_PV’s past year of commit activity
    R 0 0 0 0 Updated Jan 27, 2024
  • biocm-scripts Public

    Collection of biocm-tools for scRNAseq analysis

    BioinformaticsMUSC/biocm-scripts’s past year of commit activity
    R 1 0 0 0 Updated Nov 20, 2023
  • PryceEtAl_Cachexia Public

    scRNAseq Data Analysis Code

    BioinformaticsMUSC/PryceEtAl_Cachexia’s past year of commit activity
    R 1 0 0 0 Updated Oct 24, 2023

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