FREEC v9.5
Now forceGCcontentNormalization=1 is the default for whole exome seq data. You will get much smoother profiles using this option (set window=0 to count reads per exon; then forceGCcontentNormalization=1 will be set automatically).
Now forceGCcontentNormalization=1 is the default for whole exome seq data. You will get much smoother profiles using this option (set window=0 to count reads per exon; then forceGCcontentNormalization=1 will be set automatically).