Add script to automate RS org settings updates for local testing (#1489)

* Added script to automate updating RS org settings for local testing

* Replaced step in RS setup with script

* Extracted relative path into variable

* Added documentation for script

* Added check for yq tool in the script

README.md

@@ -347,12 +347,10 @@ with this option enabled.
 4. Run the `./cleanslate` script. For more information you can refer to the [ReportStream docs](https://github.com/CDCgov/prime-reportstream/blob/master/prime-router/docs/docs-deprecated/getting-started/getting-started.md#building-the-baseline)
 5. If attempting to access the metadata endpoint in ReportStream add the variable `ETOR_TI_baseurl="http://host.docker.internal:8080"` to `.prime-router/.vault/env/.env.local` file before building the container
 6. Run RS with `docker compose up --build -d`
-7. Edit `/settings/STLTs/Flexion/flexion.yml` to comment the lines related to staging settings, and uncomment the ones for local settings:
-   - `authTokenUrl`, `reportUrl`, `authHeaders.host` under REST `transport` in `receivers`
-   - `type` and `credentialName` under SFTP `transport` in `receivers`
-8. Run the `./reset.sh` script to reset the database
-9. Run the `./load-etor-org-settings.sh` to apply the ETOR organization settings
-10. Run the `./setup-local-vault.sh` script to set up the local vault secrets
+7. Run the `reset.sh` script to reset the database
+8. Run the `update_org_yaml.sh` script to update the RS organization settings
+9. Run the `load-etor-org-settings.sh` to apply the ETOR organization settings
+10. Run the `setup-local-vault.sh` script to set up the local vault secrets
     - You can verify that the script created the secrets successfully by going to `http://localhost:8200/` in your browser, use the token in `prime-router/.vault/env/.env.local` to authenticate, and then go to `Secrets engines` > `secret/` to check the available secrets
 
 #### Submit request to ReportStream

scripts/rs/update_org_yaml.sh

@@ -0,0 +1,48 @@
+#!/bin/bash
+
+source "$CDCTI_HOME/scripts/hurl/utils.sh"
+
+# This script updates the organization settings YAML files in RS to:
+# - use local REST transport settings for Flexion's etor-service-receiver receivers
+# - use local SFTP transport settings for Flexion's simulated-hospital and simulated-lab receivers
+# - use local SFTP transport settings for partner organizations
+
+# Requirements:
+# - yq (https://github.com/mikefarah/yq)
+# - This script should run inside the prime-router directory of the prime-reportstream codebase
+
+ORG_SETTINGS_DIR="settings/STLTs"
+
+check_installed_commands yq
+
+echo "Updating transport in Flexion org settings file..."
+yq eval '.[0].receivers[] |= (
+    select(.name == "simulated-hospital" or .name == "simulated-lab").transport = {
+        "type": "SFTP",
+        "host": "sftp",
+        "port": 22,
+        "filePath": "./upload",
+        "credentialName": "DEFAULT-SFTP"
+    } |
+    select(.name == "etor-service-receiver-orders") |= (
+        .transport.authTokenUrl = "http://host.docker.internal:8080/v1/auth/token" |
+        .transport.reportUrl = "http://host.docker.internal:8080/v1/etor/orders"
+    ) |
+    select(.name == "etor-service-receiver-results") |= (
+        .transport.authTokenUrl = "http://host.docker.internal:8080/v1/auth/token" |
+        .transport.reportUrl = "http://host.docker.internal:8080/v1/etor/results"
+    )
+)' -i "$ORG_SETTINGS_DIR/Flexion/flexion.yml"
+
+echo "Updating transport in partner org settings files..."
+for file in "$ORG_SETTINGS_DIR/CA/ucsd.yml" "$ORG_SETTINGS_DIR/LA/la-ochsner.yml" "$ORG_SETTINGS_DIR/LA/la-phl.yml"; do
+    yq eval '.[0].receivers[] |= select(.name == "etor-nbs-results" or .name == "etor-nbs-orders").transport = {
+        "type": "SFTP",
+        "host": "sftp",
+        "port": 22,
+        "filePath": "./upload",
+        "credentialName": "DEFAULT-SFTP"
+    }' -i "$file"
+done
+
+echo "Updates completed."