Merge pull request #1515 from CDCgov/e2e/1452/map-local-and-loinc-codes

E2e/1452/map local and loinc codes
CDCgov · Nov 1, 2024 · c36d1c1 · c36d1c1
2 parents 21fedf5 + 52c9d65
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diff --git a/examples/Test/Automated/003_CA_ORU_R01_CDPH_produced.hl7 b/examples/Test/Automated/003_CA_ORU_R01_CDPH_produced.hl7
diff --git a/examples/Test/Automated/004_CA_ORU_R01_leading_zeroes.hl7 b/examples/Test/Automated/004_CA_ORU_R01_leading_zeroes.hl7
@@ -1,6 +1,6 @@
-MSH|^~\&|SISGDSP|SISGDSP|SISHIERECEIVER^11903029^L,M,N|^automated-staging-test-receiver-id^L,M,N|20240226034304||ORU^R01^ORU_R01|004|N|2.5.1
+MSH|^~\&|SISGDSP|SISGDSP|SISHIERECEIVER^11903029^L,M,N|^automated-staging-test-receiver-id^L,M,N|20240226034304||ORU^R01^ORU_R01|004|N|2.5.1||||||||||
 PID|1||80008836^^^&NPI^MR||CDPHSIX^BOY  MOMSIX^^^^^B|||M||2106-3^White||||||||||||2186-5^Not Hispanic or Latino||N|1
 NK1|1|CDPHSIX|MTH^Mother|132 ST^^SAN DIEGO^CA^92126^USA
 ORC|RE|7181233072^FormNumber||189430284^HospOrdNumber||||||||^ROSEN^REBECCA|||||||||UCSD JACOBS MEDICAL CENTER^^^^^^^^^R797| 2961DR YLLUT^^SAN DIEGO^CA^99999-9999
-OBR|1|7181233072^FormNumber||54079-9^Galactosemia newborn screening panel|||202402131546|||||||||^JOHNSON^KATHRYN||||||20240226034304|||F
-OBX|1|NM|42906-8^Galactose 1 phosphate uridyl transferase^LN|1|05.100|enzyme units|>50|N|||F|||20240226034304
+OBR|1|7181233072^FormNumber||54089-8^NB Screen Panel Patient AHIC|||202402131546|||||||||^JOHNSON^KATHRYN||||||20240226034304|||F
+OBX|1|NM|42906-8^Galactose 1 phosphate uridyl transferase^LN|1|05.100|enzyme units|>50|N|||F|||20240226034304
diff --git a/examples/Test/Automated/005_CA_ORU_R01_no_leading_zeroes.hl7 b/examples/Test/Automated/005_CA_ORU_R01_no_leading_zeroes.hl7
@@ -1,6 +1,6 @@
-MSH|^~\&|SISGDSP|SISGDSP|SISHIERECEIVER^11903029^L,M,N|^automated-staging-test-receiver-id^L,M,N|20240226034304||ORU^R01^ORU_R01|005|N|2.5.1
+MSH|^~\&|SISGDSP|SISGDSP|SISHIERECEIVER^11903029^L,M,N|^automated-staging-test-receiver-id^L,M,N|20240226034304||ORU^R01^ORU_R01|005|N|2.5.1||||||||||
 PID|1||80008836^^^&NPI^MR||CDPHSIX^BOY  MOMSIX^^^^^B|||M||2106-3^White||||||||||||2186-5^Not Hispanic or Latino||N|1
 NK1|1|CDPHSIX|MTH^Mother|132 ST^^SAN DIEGO^CA^92126^USA
 ORC|RE|7181233072^FormNumber||189430284^HospOrdNumber||||||||^ROSEN^REBECCA|||||||||UCSD JACOBS MEDICAL CENTER^^^^^^^^^R797| 2961DR YLLUT^^SAN DIEGO^CA^99999-9999
-OBR|1|7181233072^FormNumber||54079-9^Galactosemia newborn screening panel|||202402131546|||||||||^JOHNSON^KATHRYN||||||20240226034304|||F
-OBX|1|NM|42906-8^Galactose 1 phosphate uridyl transferase^LN|1|0.6500|enzyme units|>50|N|||F|||20240226034304
+OBR|1|7181233072^FormNumber||54089-8^NB Screen Panel Patient AHIC|||202402131546|||||||||^JOHNSON^KATHRYN||||||20240226034304|||F
+OBX|1|NM|42906-8^Galactose 1 phosphate uridyl transferase^LN|1|0.6500|enzyme units|>50|N|||F|||20240226034304
diff --git a/examples/Test/Automated/006_CA_ORU_R01_LOINC.hl7 b/examples/Test/Automated/006_CA_ORU_R01_LOINC.hl7
@@ -0,0 +1,7 @@
+MSH|^~\&|SISGDSP|SISGDSP|SISHIERECEIVER^11903029^L,M,N|^automated-staging-test-receiver-id^L,M,N|20240226034304||ORU^R01^ORU_R01|006|N|2.5.1||||||||||
+PID|1||80008836^^^&NPI^MR||CDPHSIX^BOY  MOMSIX^^^^^B|||M||2106-3^White||||||||||||2186-5^Not Hispanic or Latino||N|1
+NK1|1|CDPHSIX|MTH^Mother|132 ST^^SAN DIEGO^CA^92126^USA
+ORC|RE|7181233072^FormNumber||189430284^HospOrdNumber||||||||^ROSEN^REBECCA|||||||||UCSD JACOBS MEDICAL CENTER^^^^^^^^^R797| 2961DR YLLUT^^SAN DIEGO^CA^99999-9999
+OBR|1|7181233072^FormNumber||54089-8^NB Screen Panel Patient AHIC|||202402131546|||||||||^JOHNSON^KATHRYN||||||20240226034304|||F
+OBR|2|7181233072^FormNumber||57128-1^Newborn Screening Report summary panel|||202402131546|||||||||^JOHNSON^KATHRYN||||||20240226034304|||F
+OBX|1|CE|^^^99717-32^Adrenoleukodystrophy deficiency newborn screening interpretation^L|1|LA18592-8^In range^LN|||N|||F|||20240226034304
diff --git a/examples/Test/Automated/007_CA_ORU_R01_PLT.hl7 b/examples/Test/Automated/007_CA_ORU_R01_PLT.hl7
@@ -0,0 +1,7 @@
+MSH|^~\&|SISGDSP|SISGDSP|SISHIERECEIVER^11903029^L,M,N|^automated-staging-test-receiver-id^L,M,N|20240226034304||ORU^R01^ORU_R01|007|N|2.5.1||||||||||
+PID|1||80008836^^^&NPI^MR||CDPHSIX^BOY  MOMSIX^^^^^B|||M||2106-3^White||||||||||||2186-5^Not Hispanic or Latino||N|1
+NK1|1|CDPHSIX|MTH^Mother|132 ST^^SAN DIEGO^CA^92126^USA
+ORC|RE|7181233072^FormNumber||189430284^HospOrdNumber||||||||^ROSEN^REBECCA|||||||||UCSD JACOBS MEDICAL CENTER^^^^^^^^^R797| 2961DR YLLUT^^SAN DIEGO^CA^99999-9999
+OBR|1|7181233072^FormNumber||54089-8^NB Screen Panel Patient AHIC|||202402131546|||||||||^JOHNSON^KATHRYN||||||20240226034304|||F
+OBR|2|7181233072^FormNumber||57128-1^Newborn Screening Report summary panel|||202402131546|||||||||^JOHNSON^KATHRYN||||||20240226034304|||F
+OBX|1|TX|^^^99717-60^SMN1 Homozygous Deletion Analysis^L|1|Exon 7 Absent||Exon 7 Present|A|||F|||20240226034304
diff --git a/rs-e2e/src/main/resources/assertion_definitions.json b/rs-e2e/src/main/resources/assertion_definitions.json
@@ -54,6 +54,34 @@
       "rules": [
         "OBX-5 = '0.6500'"
       ]
+    },
+    {
+      "name": "UCSD ORU LOINC replacement",
+      "conditions": [
+        "MSH-10 = '006'"
+      ],
+      "rules": [
+        "OBX-3.1 = '85269-9'",
+        "OBX-3.2 = 'X-linked Adrenoleukodystrophy (X- ALD) newborn screen interpretation'",
+        "OBX-3.3 = 'LN'",
+        "OBX-3.4 = input.OBX-3.4",
+        "OBX-3.5 = input.OBX-3.5",
+        "OBX-3.6 = input.OBX-3.6"
+      ]
+    },
+    {
+      "name": "UCSD ORU PLT replacement",
+      "conditions": [
+        "MSH-10 = '007'"
+      ],
+      "rules": [
+        "OBX-3.1 = 'PLT3293'",
+        "OBX-3.2 = 'SMN1 exon 7 deletion analysis in DBS by Sequencing'",
+        "OBX-3.3 = 'PLT'",
+        "OBX-3.4 = input.OBX-3.4",
+        "OBX-3.5 = input.OBX-3.5",
+        "OBX-3.6 = input.OBX-3.6"
+      ]
     }
   ]
 }