Upgrade direct Python dependencies (#6511) #6649

achave11-ucsc · 2024-10-23T15:37:54Z

Connected issues: #6511

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Added r tag to commit title _{or the changes introduced by this PR will not require reindexing of any deployment}
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Ran make docker_images.json and committed the resulting changes _{or this PR does not modify azul_docker_images, or any other variables referenced in the definition of that variable}
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make integration_test passes in personal deployment _{or this PR does not modify functionality that could affect the IT outcome}

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Shorthand for review comments

L line is too long
W line wrapping is wrong
Q bad quotes
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coveralls · 2024-10-23T18:12:48Z

coverage: 85.605% (-0.008%) from 85.613%
when pulling 51c3162 on issues/achave11-ucsc/6511-bump-python-pkgs
into efe016f on develop.

codecov · 2024-10-23T18:14:49Z

Codecov Report

Attention: Patch coverage is 94.44444% with 1 line in your changes missing coverage. Please review.

Project coverage is 85.58%. Comparing base (efe016f) to head (51c3162).

Files with missing lines	Patch %	Lines
test/integration_test.py	0.00%	1 Missing ⚠️

Additional details and impacted files

@@             Coverage Diff             @@
##           develop    #6649      +/-   ##
===========================================
- Coverage    85.59%   85.58%   -0.01%     
===========================================
  Files          155      155              
  Lines        20903    20892      -11     
===========================================
- Hits         17892    17881      -11     
  Misses        3011     3011

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

dsotirho-ucsc

Even though it is called python-requests in the User-Agent header, it is just the requests package, so I think it should be requests in the commit message:

< [R] Bumped python-requests to 2.32.3 (#6511)
> [R] Bumped requests to 2.32.3 (#6511)

dsotirho-ucsc · 2024-10-28T22:26:36Z

test/azul_test_case.py

@@ -147,6 +147,15 @@ class RE(str):
                    'The \'body\' parameter is deprecated for the \'.*\' API '
                    'and will be removed in .*. Instead use .*'
                ),
+                'validate_spec shortcut is deprecated. Use validate instead.',


This should have a FIXME comment linking to a new issue.

dsotirho-ucsc

To match other commit titles:

< [R] Bumped requests to 2.32.3 (#6511)
> [R] Bump requests to 2.32.3 (#6511)

dsotirho-ucsc · 2024-11-07T18:40:12Z

test/azul_test_case.py

+                    'Automatically retrieving remote references can be a security vulnerability and'
+                    ' is discouraged by the JSON Schema specifications. Relying on this behavior is'
+                    ' deprecated and will shortly become an error. If you are sure you want to '
+                    'remotely retrieve your reference and that it is safe to do so, you can find '
+                    'instructions for doing so via referencing.Registry in the referencing '
+                    'documentation (https://referencing.readthedocs.org).'


Inconsistent line continuation (some lines start with a space, other lines end with a space). In this situation Hannes prefers lines do not start with a space (so place the space at the end of the previous line).

dsotirho-ucsc

The two

[R] Ran make `requirements_update`

commits can be combined so there is only one as the final commit in this PR, and there is a typo in the commit title (the backquote should start before make)

[R] Ran `make requirements_update`

dsotirho-ucsc

Approved.

hannes-ucsc · 2024-11-14T19:09:35Z

requirements.txt

+# Updating the following package beyond 3.13.x > breaks test & production code
+google-cloud-bigquery==3.13.0


Can't have comment lines like this. Each line needs to be a dependency. If there is a comment, it needs to be at the end of a dependency line. Please create a ticket and

Suggested change

# Updating the following package beyond 3.13.x > breaks test & production code

google-cloud-bigquery==3.13.0

google-cloud-bigquery==3.13.0 # Can't go higher, due to <insert ticket reference here>

The ticket should have a reproduction indicating what breaks if we were to go higher. The title of the commit should refer to #6511 and the new ticket.

Understood. But just to clarify, I was following the directive as prescribed (last sentence).

…6511, #6709)

test/azul_test_case.py

achave11-ucsc · 2024-11-15T19:09:35Z

requirements.txt

+# Updating the following package beyond 3.13.x > breaks test & production code
+google-cloud-bigquery==3.13.0


Understood. But just to clarify, I was following the directive as prescribed (last sentence).

github-actions bot added the orange [process] Done by the Azul team label Oct 23, 2024

achave11-ucsc added the reqs [process] PR includes commit requiring ``make requirements`` label Oct 23, 2024

achave11-ucsc force-pushed the issues/achave11-ucsc/6511-bump-python-pkgs branch 4 times, most recently from 6892a70 to 2dd0f26 Compare October 23, 2024 17:53

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achave11-ucsc added 8 commits November 15, 2024 10:35

Fix ordering in requirement files

ecb717b

[R] Upgrade direct Python dependencies & cap google-cloud-bigquery (#…

9eaa9b0

…6511, #6709)

[R] Bump requests to 2.32.3 (#6511)

7b14ce9

[R] Bump awscli, boto* and moto packages to more recent versions (#6511)

c3da0b0

[R] Bump openapi-spec-validator to 0.7.1 (#6511)

b8c7f7d

Add FIXME (#6666)

14dabf2

[R] Bump flake8 to 7.1.1 (#6511)

3ad2327

[R] Ran make requirements_update

51c3162

achave11-ucsc dismissed dsotirho-ucsc’s stale review via 51c3162 November 15, 2024 18:35

achave11-ucsc force-pushed the issues/achave11-ucsc/6511-bump-python-pkgs branch from ba8b955 to 51c3162 Compare November 15, 2024 18:35

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Upgrade direct Python dependencies (#6511) #6649

Upgrade direct Python dependencies (#6511) #6649

achave11-ucsc commented Oct 23, 2024 •

edited by dsotirho-ucsc

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achave11-ucsc Nov 15, 2024

		# Updating the following package beyond 3.13.x > breaks test & production code
		google-cloud-bigquery==3.13.0

	# Updating the following package beyond 3.13.x > breaks test & production code
	google-cloud-bigquery==3.13.0
	google-cloud-bigquery==3.13.0 # Can't go higher, due to <insert ticket reference here>

Upgrade direct Python dependencies (#6511) #6649

Are you sure you want to change the base?

Upgrade direct Python dependencies (#6511) #6649

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achave11-ucsc commented Oct 23, 2024 • edited by dsotirho-ucsc Loading

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achave11-ucsc commented Oct 23, 2024 •

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