Fixing download script due to removal of nucl_est files by NCBI

DerrickWood · Apr 15, 2019 · 562c290 · 562c290
1 parent f92ab4c
commit 562c290
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/scripts/download_taxonomy.sh b/scripts/download_taxonomy.sh
@@ -32,7 +32,7 @@ if [ ! -e "accmap.dlflag" ] && [ -z "$KRAKEN2_SKIP_MAPS" ]
 then
   if [ -z "$KRAKEN2_PROTEIN_DB" ]
   then
-    for subsection in est gb gss wgs
+    for subsection in gb wgs
     do
       1>&2 echo -n "Downloading nucleotide ${subsection} accession to taxon map..."
       download_file "/pub/taxonomy/accession2taxid/nucl_${subsection}.accession2taxid.gz"