UI redaction

imagedephi/gui.py

@@ -11,7 +11,7 @@
 import urllib.parse
 
 from PIL import Image, UnidentifiedImageError
-from fastapi import BackgroundTasks, FastAPI, Form, HTTPException, Request
+from fastapi import BackgroundTasks, FastAPI, Form, HTTPException, Request, WebSocket
 from fastapi.responses import HTMLResponse, PlainTextResponse, StreamingResponse
 from fastapi.staticfiles import StaticFiles
 from fastapi.templating import Jinja2Templates
@@ -20,6 +20,9 @@
 import tifftools
 
 from imagedephi.redact import iter_image_files, redact_images
+from imagedephi.utils.progress_log import get_next_progress_message
+
+# from imagedephi.redact.redact import output_file_counter
 from imagedephi.utils.tiff import get_associated_image_svs, get_ifd_for_thumbnail, get_is_svs
 
 if TYPE_CHECKING:
@@ -67,6 +70,7 @@ async def lifespan(app: FastAPI) -> AsyncGenerator[None, None]:
 shutdown_event = asyncio.Event()
 
 app.mount("/assets", StaticFiles(directory="imagedephi/assets"), name="assets")
+app.mount("/js", StaticFiles(directory="imagedephi/js"), name="js")
 
 
 class DirectoryData:
@@ -268,3 +272,14 @@ def redact(
             "redacted": True,
         },
     )
+
+
+@app.websocket("/ws")
+async def websocket_endpoint(websocket: WebSocket):
+    await websocket.accept()
+    while True:
+        message = get_next_progress_message()
+        if message is not None:
+            await websocket.send_text(str({message[0]}))
+        else:
+            await asyncio.sleep(0.001)

imagedephi/js/redaction.js

@@ -0,0 +1,12 @@
+window.onload = (event) => {
+
+  const redactBanner = document.getElementById("redacting");
+  const redactButton = document.getElementById("dephi");
+  const redactForm = document.getElementById('redact')
+  redactForm.addEventListener("submit", () => {
+    redactButton.setAttribute("disabled", "true")
+    redactBanner.classList.remove("hidden")
+    location.reload()
+  })
+
+}

imagedephi/main.py

@@ -114,9 +114,9 @@ def imagedephi(
 @click.pass_obj
 def run(obj: ImagedephiContext, input_path: Path, output_dir: Path, verbose, quiet, log_file):
     """Perform the redaction of images."""
-    redact_images(input_path, output_dir, obj.override_rule_set)
     if verbose or quiet or log_file:
         set_logging_config(verbose, quiet, log_file)
+    redact_images(input_path, output_dir, obj.override_rule_set)
 
 
 @imagedephi.command

imagedephi/redact/redact.py

@@ -3,14 +3,17 @@
 from collections.abc import Generator
 import datetime
 import importlib.resources
+from io import StringIO
 from pathlib import Path
 
+import click
 import tifftools
 import tifftools.constants
 import yaml
 
 from imagedephi.rules import Ruleset
 from imagedephi.utils.logger import logger
+from imagedephi.utils.progress_log import push_progress
 
 from .build_redaction_plan import FILE_EXTENSION_MAP, build_redaction_plan
 from .svs import MalformedAperioFileError
@@ -78,24 +81,32 @@ def redact_images(
     output_file_max = len(images_to_redact)
     redact_dir = create_redact_dir(output_dir)
     show_redaction_plan(input_path)
-    for image_file in images_to_redact:
-        logger.info(f"Redacting {image_file.name}...")
-        if image_file.suffix in FILE_EXTENSION_MAP:
-            redaction_plan = build_redaction_plan(image_file, base_rules, override_rules)
-            if not redaction_plan.is_comprehensive():
-                logger.info(f"Redaction could not be performed for {image_file.name}.")
-                redaction_plan.report_missing_rules()
-            else:
-                redaction_plan.execute_plan()
-                output_path = _get_output_path(
-                    image_file,
-                    redact_dir,
-                    output_file_name_base,
-                    output_file_counter,
-                    output_file_max,
-                )
-                redaction_plan.save(output_path, overwrite)
-            output_file_counter += 1
+
+    file = StringIO()
+    with click.progressbar(
+        images_to_redact, label="Redacting Images", show_pos=True, file=file, show_percent=True
+    ) as bar:
+        for image_file in bar:
+            push_progress(image_file.name, output_file_counter, output_file_max)
+
+            if image_file.suffix in FILE_EXTENSION_MAP:
+                redaction_plan = build_redaction_plan(image_file, base_rules, override_rules)
+                if not redaction_plan.is_comprehensive():
+                    logger.info(f"Redaction could not be performed for {image_file.name}.")
+                    redaction_plan.report_missing_rules()
+                else:
+                    redaction_plan.execute_plan()
+                    output_path = _get_output_path(
+                        image_file,
+                        redact_dir,
+                        output_file_name_base,
+                        output_file_counter,
+                        output_file_max,
+                    )
+                    redaction_plan.save(output_path, overwrite)
+                    if output_file_counter == output_file_max:
+                        click.echo("Redactions completed")
+                output_file_counter += 1
 
 
 def show_redaction_plan(input_path: Path, override_rules: Ruleset | None = None) -> None:

imagedephi/templates/HomePage.html.j2

@@ -68,11 +68,12 @@
       },
     }
     </script>
+    <script type="text/javascript" src="js/redaction.js"></script>
   </head>
   <body class="bg-base-300 min-h-screen">
     <div class="flex">
       <!-- djlint:off-->
-      <form method="post" action="{{ url_for('redact') }}"><!-- djlint:on -->
+      <form method="post" action="{{ url_for('redact') }}" id="redact"><!-- djlint:on -->
         <input type="hidden"
                value="{{ input_directory_data.directory }}"
                name="input_directory" />
@@ -96,7 +97,7 @@
               {% include "InputStep.html.j2" %}
               {% include "OutputStep.html.j2" %}
               {% include "RulesetStep.html.j2" %}
-              <button type="submit" class="btn btn-wide bg-accent m-auto" {{ 'disabled' if redacted}}>De-phi
+              <button type="submit" class="btn btn-wide bg-accent m-auto" {{ 'disabled' if redacted}} id="dephi">De-phi
                 images
               </button>
             </div>
@@ -108,6 +109,27 @@
         {% include "OutputSelectorWidget.html.j2" %}
       </form>
       {# TODO make into a separate component #}
+      <div class="px-8 py-4 hidden" id="redacting">
+        <div class="hero bg-base-200 m-auto">
+          <div class="hero-content text-center">
+            <div>
+              <h1 class="text-5xl font-bold">Redacting Images</h1>
+            </div>
+            <div>
+              Redacting image <span id='progress'></span> out of {{ input_directory_data.child_images|length }}
+              <script>
+                  var ws = new WebSocket("{{ url_for('websocket_endpoint') }}");
+
+                var progress = document.getElementById('progress');
+                ws.onmessage = function (event) {
+                  progress.textContent = event.data.slice(1, event.data.length - 1)
+                };
+
+              </script>
+            </div>
+          </div>
+        </div>
+      </div>
       {% if redacted %}
         <div class="px-8 py-4">
           <div class="hero bg-base-200">

imagedephi/utils/progress_log.py

@@ -0,0 +1,25 @@
+# import logging
+# import logging.handlers
+import queue
+
+# _progress_logger = logging.getLogger('progress')
+# _progress_queue: queue.Queue[logging.LogRecord] = queue.Queue(-1)
+_progress_queue: queue.Queue[tuple] = queue.Queue(-1)
+
+# _queue_handler = logging.handlers.QueueHandler(_progress_queue)
+# _progress_logger.addHandler(_queue_handler)
+
+
+def push_progress(file_name: str, count: int, max: int) -> None:
+    # _progress_logger.info("Redacting %s. Image %d of %d", file_name, count, max)
+    _progress_queue.put_nowait((count, max))
+
+
+def get_next_progress_message() -> tuple | None:
+    try:
+        record = _progress_queue.get_nowait()
+    except queue.Empty:
+        return None
+    else:
+        # return record.message
+        return record

pyproject.toml

@@ -14,6 +14,7 @@ dependencies = [
     "hypercorn",
     "pyyaml",
     "Pillow",
+    "websockets",
 ]
 dynamic = ["version"]