update to support 3.8 to 3.11, linting (#105)

.github/workflows/CI.yml

@@ -56,7 +56,7 @@ jobs:
     runs-on: ubuntu-latest
     strategy:
       matrix:
-        python-version: [3.8]
+        python-version: [3.8, 3.11]
     steps:
     - name: Update Package References
       run: sudo apt-get update

docker/girder.Dockerfile

@@ -16,7 +16,7 @@ RUN yarn build:web
 # == SERVER BUILD STAGE ==
 # ========================
 # Note: server-builder stage will be the same in both dockerfiles
-FROM python:3.8-buster as server-builder
+FROM python:3.11-buster as server-builder
 
 WORKDIR /opt/dive/src
 
@@ -48,7 +48,7 @@ RUN girder build
 # =================
 # == DIST SERVER ==
 # =================
-FROM python:3.8-slim-buster as server
+FROM python:3.11-slim-buster as server
 
 # Hack: Tell GitPython to be quiet, we aren't using git
 ENV GIT_PYTHON_REFRESH="quiet"

server/dive_server/crud.py

@@ -1,4 +1,5 @@
 """General CRUD operations and utilities shared among views"""
+
 from enum import Enum
 import functools
 import os

server/dive_server/views_override.py

@@ -1,4 +1,5 @@
 """adds functionality to existing girder views"""
+
 from girder.api import access
 from girder.api.describe import Description, autoDescribeRoute
 from girder.api.rest import boundHandler

server/dive_utils/__init__.py

@@ -1,4 +1,5 @@
 """Utilities that are common to both the viame server and tasks package."""
+
 import itertools
 import re
 from typing import Any, Dict, List, Union

server/dive_utils/serializers/kpf.py

@@ -4,6 +4,7 @@
 
 It is the python implementation of client/platform/backend/serializers/kpf.ts
 """
+
 from collections import defaultdict
 from typing import Dict, List, Mapping, Tuple, TypedDict, cast
 

server/dive_utils/serializers/kwcoco.py

@@ -1,6 +1,7 @@
 """
 KWCOCO JSON format deserializer
 """
+
 import functools
 from typing import Any, Dict, List, Tuple
 

server/dive_utils/serializers/viame.py

@@ -1,6 +1,7 @@
 """
 VIAME Fish format deserializer
 """
+
 import csv
 import datetime
 import io

server/pyproject.toml

@@ -1,7 +1,7 @@
 [tool.black]
 line-length = 100
 skip-string-normalization = true
-target-version = ["py38"]
+target-version = ["py311"]
 exclude = '\.eggs|\.git|\.mypy_cache|\.tox|\.env|\.venv|env|venv|_build|buck-out|build|dist'
 
 [tool.isort]
@@ -13,7 +13,7 @@ force_sort_within_sections = true
 combine_as_imports = true
 
 [tool.mypy]
-python_version = 3.8
+python_version = 3.11
 ignore_missing_imports = true
 show_error_context = true
 show_column_numbers = true
@@ -37,6 +37,7 @@ classifiers = [
   "Programming Language :: Python :: 3",
   "Programming Language :: Python :: 3.8",
   "Programming Language :: Python :: 3.9",
+  "Programming Language :: Python :: 3.11",
 ]
 packages = [
   { include = "dive_server" },
@@ -45,7 +46,7 @@ packages = [
 ]
 
 [tool.poetry.dependencies]
-python = ">=3.8,<3.10"
+python = ">=3.8,<3.12"
 cheroot = ">=8.4.5"
 click = "^8.1.3"
 girder = ">=3.1.16"
@@ -78,7 +79,7 @@ dive_server = "dive_server:GirderPlugin"
 dive_tasks = "dive_tasks:DIVEPlugin"
 
 [build-system]
-requires = ["poetry-core>=1.0.0", "poetry-dynamic-versioning"]
+requires = ["poetry-core>=1.0.0", "poetry-dynamic-versioning>=1.0.0,<2.0.0"]
 build-backend = "poetry_dynamic_versioning.backend"
 
 [tool.poetry-dynamic-versioning]

server/scripts/commands_dev.py

@@ -4,6 +4,7 @@
 
 Debug cli needs [dev] extra_require from setuptools.
 """
+
 import os
 
 import click

server/scripts/commands_main.py

@@ -1,6 +1,7 @@
 """
 Cli tools for using parts of the DIVE codebase outside a web server environment
 """
+
 import functools
 import json
 from typing import BinaryIO, Dict, List, Optional, TextIO