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v1.2: Technical improvements and bug fixes
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@tskir tskir released this 11 Aug 14:54
· 689 commits to master since this release
v1.2
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  • #138 Refactor approach for submitting and reusing ZOOMA feedback
    • Now the trait-to-ontology mappings from previous iterations of manual curation are reused directly, rather than relying on files for ZOOMA feedback, and also the feedback files themselves are generated at more appropriate stages of the pipeline.
    • This solves a number of issues which occur where two iterations of manual curation happen back to back without evidence string generation in between.
  • #140 Use virtualenv, reorganise dependencies and pin their versions
    • For more consistent dependency management, the pipeline now uses virtualenv for all purposes.
    • The list of dependencies was reorganised and their versions were pinned.
    • Fixed problems caused by release of Pandas 1.1.0 with multiple regressions by downgrading to Pandas 1.0.5.
  • #141 Changes for batch 2020.09. Includes update from JSON schema 1.6.7 to 1.7.1 (only test files and version updates, no actual evidence string format changes necessary) and minor documentation fixes.
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