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v1.3.1: Minor updates for the 2020.11 batch
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@tskir tskir released this 21 Oct 07:41
· 644 commits to master since this release
v1.3.1
b1f78a1
  • Evidence string related changes
    • Migrated to Open Targets schema version 1.7.3.
    • Minor updates to the evidence string generation review checklist.
    • Evidence string name format changed from DD-MM-YYYY to YYYY-MM-DD.
  • Other changes
    • Minor fixes to the manual curation protocol to ensure stable sort order.
    • ClinVar data examination script now calculates distributions of allele origins as well.

The latest ClinVar version with which this pipeline will work is 2020/08. After that, the variant_summary.tsv format has changed so that it does not include a “NT expansion” category anymore.

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