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v2.0.2: Corrections and updates for the Open Targets batch 2021.04
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@tskir tskir released this 22 Mar 13:13
· 548 commits to master since this release
v2.0.2
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Resolves several issues with evidence strings loss in v2.0.0 and v2.0.1 compared to v1.3.2:

  • All ClinVar traits are now processed instead of only “Disease” type traits.
  • All names of a ClinVar trait are now used for looking up the corresponding ontology term. Previously, only the preferred name was used, which does not always correspond to the one in the string-to-ontology mapping database.
  • Reintroduced processing of mitochondrial variants and variants containing IUPAC ambiguity bases. They were previously skipped due to not being supported by the Open Targets schema.

Technical changes:

  • Updated the Open Targets schema version: 2.0.5 → 2.0.6.
  • Updated test data and assertions to fix some inconsistencies which weren't spotted in v2.0.0 and v2.0.1 releases.
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