Bug fixes #233
Annotations
10 errors and 1 notice
|
Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L44
failed to run `@example` block in src/advection.md:37-40
```@example advection
sys_advection = couple(ExampleSys(), domain, ConstantWind(t, 1.0), Advection())
sys_mtk = convert(PDESystem, sys_advection)
```
exception =
Partial independent variable 'x' not found in system parameters [SymbolicUtils.BasicSymbolic{Real}[ExampleSys₊p]].
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:35
[2] coord_params(mtk_sys::ModelingToolkit.ODESystem, domain::DomainInfo{Float64})
@ EarthSciMLBase ~/work/EarthSciMLBase.jl/EarthSciMLBase.jl/src/coupled_system_utils.jl:302
[3] partialderivative_transform_vars(mtk_sys::ModelingToolkit.ODESystem, di::DomainInfo{Float64})
@ EarthSciMLBase ~/work/EarthSciMLBase.jl/EarthSciMLBase.jl/src/domaininfo.jl:271
[4] partialderivative_transform_eqs(mtk_sys::ModelingToolkit.ODESystem, di::DomainInfo{Float64})
@ EarthSciMLBase ~/work/EarthSciMLBase.jl/EarthSciMLBase.jl/src/domaininfo.jl:285
[5] convert(::Type{ModelingToolkit.ODESystem}, sys::CoupledSystem; name::Symbol, simplify::Bool, prune::Bool, kwargs::@kwargs{})
@ EarthSciMLBase ~/work/EarthSciMLBase.jl/EarthSciMLBase.jl/src/coupled_system.jl:175
[6] convert
@ ~/work/EarthSciMLBase.jl/EarthSciMLBase.jl/src/coupled_system.jl:147 [inlined]
[7] convert(::Type{ModelingToolkit.PDESystem}, sys::CoupledSystem; name::Symbol, kwargs::@kwargs{})
@ EarthSciMLBase ~/work/EarthSciMLBase.jl/EarthSciMLBase.jl/src/coupled_system.jl:200
[8] convert(::Type{ModelingToolkit.PDESystem}, sys::CoupledSystem)
@ EarthSciMLBase ~/work/EarthSciMLBase.jl/EarthSciMLBase.jl/src/coupled_system.jl:199
[9] top-level scope
@ advection.md:39
[10] eval
@ ./boot.jl:430 [inlined]
[11] #60
@ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined]
[12] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[13] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753
[14] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[15] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:522
[16] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:632
[17] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[18] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752
|
|
Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L44
failed to run `@example` block in src/advection.md:44-59
```@example advection
using MethodOfLines, DifferentialEquations, Plots
discretization = MOLFiniteDifference([x=>10], t, approx_order=2)
@time prob = discretize(sys_mtk, discretization)
@time sol = solve(prob, Tsit5(), saveat=0.1)
# Plot the solution.
discrete_x = sol[x]
discrete_t = sol[t]
soly = sol[sys_mtk.dvs[3]]
anim = @Animate for k in 1:length(discrete_t)
plot(discrete_x, soly[k, 1:end], title="t=\$(discrete_t[k])", ylim=(0,2.5), lab=:none)
end
gif(anim, fps = 8)
```
exception =
The following 1 direct dependency failed to precompile:
DifferentialEquations
Failed to precompile DifferentialEquations [0c46a032-eb83-5123-abaf-570d42b7fbaa] to "/home/runner/.julia/compiled/v1.11/DifferentialEquations/jl_U13fiJ".
ERROR: LoadError: TaskFailedException
nested task error: MethodError: no method matching (SciMLBase.NonlinearFunction{true, SciMLBase.FullSpecialize, BoundaryValueDiffEqFIRK.var"#117#123"{BoundaryValueDiffEqFIRK.FIRKCacheExpand{true, Float64, Tuple{Int64}, SciMLBase.BVPFunction{true, SciMLBase.FullSpecialize, false, typeof(BoundaryValueDiffEqFIRK.f1!), typeof(BoundaryValueDiffEqFIRK.bc1!), LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing, SymbolicIndexingInterface.SymbolCache{Nothing, Nothing, Nothing, Nothing, Dict{Any, Any}}, Nothing}, typeof(BoundaryValueDiffEqFIRK.bc1!), SciMLBase.BVProblem{Vector{Float64}, Tuple{Float64, Float64}, true, false, SciMLBase.NullParameters, SciMLBase.BVPFunction{true, SciMLBase.FullSpecialize, false, typeof(BoundaryValueDiffEqFIRK.f1!), typeof(BoundaryValueDiffEqFIRK.bc1!), LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing, SymbolicIndexingInterface.SymbolCache{Nothing, Nothing, Nothing, Nothing, Dict{Any, Any}}, Nothing}, SciMLBase.StandardBVProblem, Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}}, SciMLBase.StandardBVProblem, SciMLBase.NullParameters, BoundaryValueDiffEqFIRK.RadauIIa2{Nothing, BoundaryValueDiffEqCore.BVPJacobianAlgorithm{ADTypes.AutoForwardDiff{2, Nothing}, ADTypes.AutoForwardDiff{2, Nothing}, ADTypes.AutoForwardDiff{2, Nothing}}, Float64}, BoundaryValueDiffEqFIRK.FIRKTableau{false, Int64, Matrix{Float64}, Vector{Float64}, Vector{Float64}}, BoundaryValueDiffEqFIRK.FIRKInterpTableau{false, Matrix{Float64}, Float64}, Vector{Float64}, Vector{Float64}, Vector{Float64}, Vector{PreallocationTools.DiffCache{Matrix{Float64}, Vector{Float64}}}, Vector{PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}}, RecursiveArrayTools.VectorOfArray{Float64, 2, Vector{Vector{Float64}}}, Vector{PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, RecursiveArrayTools.VectorOfArray{Float64, 2, Vector{Vector{Float64}}}, Tuple{Int64}, @NamedTuple{abstol::Float64, dt::Float64, adaptive::Bool}}, SciMLBase.StandardBVProblem}, Nothing, Nothing, Nothing, BoundaryValueDiffEqFIRK.var"#125#127"{Matrix{Float64}, BoundaryValueDiffEqCore.BVPJacobianAlgorithm{ADTypes.AutoForwardDiff{2, Nothing}, ADTypes.AutoForwardDiff{2, Nothing}, ADTypes.AutoForwardDiff{2, Nothing}}, SparseDiffTools.ForwardDiffJacobianCache{SparseDiffTools.NoMatrixColoring, ForwardDiff.JacobianConfig{ForwardDiff.Tag{BoundaryValueDiffEqCore.__Fix3{BoundaryValueDiffEqFIRK.var"#113#119"{SciMLBase.StandardBVProblem, BoundaryValueDiffEqFIRK.FIRKCacheExpand{true, Float64, Tuple{Int64}, SciMLBase.BVPFunction{true, SciMLBase.FullSpecialize, false, typeof(BoundaryValueDiffEqFIRK.f1!), typeof(BoundaryValueDiffEqFIRK.bc1!), LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.
|
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Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L44
failed to run `@example` block in src/example_all_together.md:11-32
```@example ex1
using EarthSciMLBase
using ModelingToolkit, Catalyst, DomainSets, MethodOfLines, DifferentialEquations
using ModelingToolkit: t_nounits, D_nounits
t = t_nounits
D = D_nounits
using Plots
# Create our independent variable `t` and our partially-independent variables `x` and `y`.
@parameters x y
struct ExampleSys1Coupler sys end
function ExampleSys1()
@species c₁(t)=5.0 c₂(t)=5.0
rs = ReactionSystem(
[Reaction(2.0, [c₁], [c₂])],
t; name=:Sys1, combinatoric_ratelaws=false)
convert(ODESystem, complete(rs), metadata=Dict(:coupletype=>ExampleSys1Coupler))
end
ExampleSys1()
```
exception =
The following 1 direct dependency failed to precompile:
DifferentialEquations
Failed to precompile DifferentialEquations [0c46a032-eb83-5123-abaf-570d42b7fbaa] to "/home/runner/.julia/compiled/v1.11/DifferentialEquations/jl_b21zBg".
ERROR: LoadError: TaskFailedException
nested task error: MethodError: no method matching (SciMLBase.NonlinearFunction{true, SciMLBase.FullSpecialize, BoundaryValueDiffEqFIRK.var"#117#123"{BoundaryValueDiffEqFIRK.FIRKCacheExpand{true, Float64, Tuple{Int64}, SciMLBase.BVPFunction{true, SciMLBase.FullSpecialize, false, typeof(BoundaryValueDiffEqFIRK.f1!), typeof(BoundaryValueDiffEqFIRK.bc1!), LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing, SymbolicIndexingInterface.SymbolCache{Nothing, Nothing, Nothing, Nothing, Dict{Any, Any}}, Nothing}, typeof(BoundaryValueDiffEqFIRK.bc1!), SciMLBase.BVProblem{Vector{Float64}, Tuple{Float64, Float64}, true, false, SciMLBase.NullParameters, SciMLBase.BVPFunction{true, SciMLBase.FullSpecialize, false, typeof(BoundaryValueDiffEqFIRK.f1!), typeof(BoundaryValueDiffEqFIRK.bc1!), LinearAlgebra.UniformScaling{Bool}, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, Nothing, typeof(SciMLBase.DEFAULT_OBSERVED), Nothing, Nothing, SymbolicIndexingInterface.SymbolCache{Nothing, Nothing, Nothing, Nothing, Dict{Any, Any}}, Nothing}, SciMLBase.StandardBVProblem, Base.Pairs{Symbol, Union{}, Tuple{}, @NamedTuple{}}}, SciMLBase.StandardBVProblem, SciMLBase.NullParameters, BoundaryValueDiffEqFIRK.RadauIIa2{Nothing, BoundaryValueDiffEqCore.BVPJacobianAlgorithm{ADTypes.AutoForwardDiff{2, Nothing}, ADTypes.AutoForwardDiff{2, Nothing}, ADTypes.AutoForwardDiff{2, Nothing}}, Float64}, BoundaryValueDiffEqFIRK.FIRKTableau{false, Int64, Matrix{Float64}, Vector{Float64}, Vector{Float64}}, BoundaryValueDiffEqFIRK.FIRKInterpTableau{false, Matrix{Float64}, Float64}, Vector{Float64}, Vector{Float64}, Vector{Float64}, Vector{PreallocationTools.DiffCache{Matrix{Float64}, Vector{Float64}}}, Vector{PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}}, RecursiveArrayTools.VectorOfArray{Float64, 2, Vector{Vector{Float64}}}, Vector{PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}}, PreallocationTools.DiffCache{Vector{Float64}, Vector{Float64}}, Vector{Float64}, RecursiveArrayTools.VectorOfArray{Float64, 2, Vector{Vector{Float64}}}, Tuple{Int64}, @NamedTuple{abstol::Float64, dt::Float64, adaptive::Bool}}, SciMLBase.StandardBVProblem}, Nothing, Nothing, Nothing, BoundaryValueDiffEqFIRK.var"#125#127"{Matrix{Float64}, BoundaryValueDiffEqCore.BVPJacobianAlgorithm{ADTypes.AutoForwardDiff{2, Nothing}, ADTypes.AutoForwardDiff{2, Nothing}, ADTypes.AutoForwardDiff{2, Nothing}}, SparseDiffTools.ForwardDiffJacobianCache{SparseDiffTools.NoMatrixColoring, ForwardDiff.JacobianConfig{ForwardDiff.Tag{BoundaryValueDiffEqCore.__Fix3{BoundaryValueDiffEqFIRK.var"#113#119"{SciMLBase.StandardBVProblem, BoundaryValueDiffEqFIRK.FIRKCacheExpand{true, Float64, Tuple{Int64}, SciMLBase.BVPFunction{true, SciMLBase.FullSpecialize, false, typeof(BoundaryValueDiffEqFIRK.f1!), typeof(BoundaryValueDiffEqFIRK.bc1!), LinearAlgebra.Unifor
|
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Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L44
failed to run `@example` block in src/example_all_together.md:36-47
```@example ex1
struct ExampleSys2Coupler sys end
function ExampleSys2()
@variables c₁(t)=5.0 c₂(t)=5.0
@parameters p₁=1.0 p₂=0.5
ODESystem(
[D(c₁) ~ -p₁, D(c₂) ~ p₂],
t; name=:Sys2, metadata=Dict(:coupletype=>ExampleSys2Coupler))
end
ExampleSys2()
```
exception =
UndefVarError: `t` not defined in `Main.__atexample__named__ex1`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
[1] ExampleSys2()
@ Main.__atexample__named__ex1 ./example_all_together.md:39
[2] top-level scope
@ example_all_together.md:46
[3] eval
@ ./boot.jl:430 [inlined]
[4] #60
@ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined]
[5] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[6] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753
[7] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[8] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:522
[9] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:632
[10] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[11] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752
|
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Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L44
failed to run `@example` block in src/example_all_together.md:55-62
```@example ex1
function EarthSciMLBase.couple2(sys1::ExampleSys1Coupler, sys2::ExampleSys2Coupler)
sys1, sys2 = sys1.sys, sys2.sys
sys1 = convert(ODESystem, sys1)
operator_compose(sys1, sys2)
end
nothing # hide
```
exception =
UndefVarError: `ExampleSys1Coupler` not defined in `Main.__atexample__named__ex1`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
[1] top-level scope
@ example_all_together.md:56
[2] eval
@ ./boot.jl:430 [inlined]
[3] #60
@ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined]
[4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753
[6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:522
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:632
[9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752
|
|
Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L44
failed to run `@example` block in src/example_all_together.md:66-72
```@example ex1
sys1 = ExampleSys1()
sys2 = ExampleSys2()
sys = couple(sys1, sys2)
convert(ODESystem, sys)
```
exception =
UndefVarError: `ExampleSys1` not defined in `Main.__atexample__named__ex1`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
[1] top-level scope
@ example_all_together.md:67
[2] eval
@ ./boot.jl:430 [inlined]
[3] #60
@ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined]
[4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753
[6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:522
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:632
[9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752
|
|
Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L44
failed to run `@example` block in src/example_all_together.md:77-79
```@example ex1
simplified_sys = structural_simplify(convert(ODESystem, sys))
```
exception =
UndefVarError: `sys` not defined in `Main.__atexample__named__ex1`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
[1] top-level scope
@ example_all_together.md:78
[2] eval
@ ./boot.jl:430 [inlined]
[3] #60
@ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined]
[4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753
[6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:522
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:632
[9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752
|
|
Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L44
failed to run `@example` block in src/example_all_together.md:81-83
```@example ex1
observed(simplified_sys)
```
exception =
UndefVarError: `simplified_sys` not defined in `Main.__atexample__named__ex1`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
[1] top-level scope
@ example_all_together.md:82
[2] eval
@ ./boot.jl:430 [inlined]
[3] #60
@ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined]
[4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753
[6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:522
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:632
[9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752
|
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Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L44
failed to run `@example` block in src/example_all_together.md:87-91
```@example ex1
odeprob = ODEProblem(simplified_sys, [], (0.0,10.0), [])
odesol = solve(odeprob)
plot(odesol)
```
exception =
UndefVarError: `simplified_sys` not defined in `Main.__atexample__named__ex1`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
[1] top-level scope
@ example_all_together.md:88
[2] eval
@ ./boot.jl:430 [inlined]
[3] #60
@ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined]
[4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753
[6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:522
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:632
[9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752
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Run julia-actions/julia-docdeploy@v1:
../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L44
failed to run `@example` block in src/example_all_together.md:99-111
```@example ex1
x_min = y_min = t_min = 0.0
x_max = y_max = t_max = 1.0
domain = DomainInfo(
constIC(4.0, t ∈ Interval(t_min, t_max)),
periodicBC(x ∈ Interval(x_min, x_max)),
zerogradBC(y ∈ Interval(y_min, y_max)),
)
sys_pde = couple(sys, domain, ConstantWind(t, 1.0, 1.0), Advection())
sys_pde_mtk = convert(PDESystem, sys_pde)
```
exception =
UndefVarError: `t` not defined in `Main.__atexample__named__ex1`
Suggestion: check for spelling errors or missing imports.
Stacktrace:
[1] top-level scope
@ example_all_together.md:102
[2] eval
@ ./boot.jl:430 [inlined]
[3] #60
@ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined]
[4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String)
@ Base.Filesystem ./file.jl:112
[5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})()
@ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753
[6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})()
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170
[7] with_logstate(f::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}}, logstate::Base.CoreLogging.LogState)
@ Base.CoreLogging ./logging/logging.jl:522
[8] with_logger(f::Function, logger::Base.CoreLogging.ConsoleLogger)
@ Base.CoreLogging ./logging/logging.jl:632
[9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any})
@ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167
[10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document)
@ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752
|
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Run julia-actions/julia-buildpkg@v1
Consider using `julia-actions/cache` to speed up runs https://github.com/julia-actions/cache. To ignore, set input `ignore-no-cache: true`
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