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This repo includes a Matlab toolbox for CORE-Deblur - a Parallel Imaging + Compressed Sensing method

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EfratShimron/CORE_Deblur_toolbox

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A Matlab toolbox for CORE-Deblur


CORE-Deblur is a Parallel Imaging + Compressed Sensing (PI+CS) method. CORE-Deblur enables reducing the number of Compressed Sensing iterations by a factor of 10.

This toolbox contains Matlab code that implements the CORE-Deblur algorith that is described in the paper. The toolbox includes examples with simulated phantom data and and in-vivo 7T brain data.

Getting Started

Clone or download the repository.

To see the demos run one of thes following Matlab scripts:

  1. demo1_in_vivo - this code includes two examples with in-vivo 32-coils 7T brain data. The code reproduces the results from Figures 3 and 4 in the paper, for example:








  1. demo2_brain_phantom - this code includes four examples with simulated brain phantom data and subsampling with a reduction factor of R=10. It will reproduce the results from this figure (Fig. 2 in the paper):

.

Acknowledgments

The in-vivo data is courtesy of Prof. Andrew G. Webb from Leiden University Medical Center (LUMC).

The Realistic Analytical Brain Phantom data was utilized here with permission from the authors of: Guerquin-Kern, Matthieu, et al. "Realistic analytical phantoms for parallel magnetic resonance imaging." IEEE Transactions on Medical Imaging 31.3 (2011): 626-636. If you use that data in your publications, please cite this paper.

Prerequisites

A liscence for Matlab is required. The code was tested with Matlab2017R.

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This repo includes a Matlab toolbox for CORE-Deblur - a Parallel Imaging + Compressed Sensing method

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