updates

Euro-BioImaging · Dec 6, 2024 · e3ce358 · e3ce358
1 parent 33ad55d
commit e3ce358
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Showing 2 changed files with 4 additions and 4 deletions.
diff --git a/assets/schema_input.json b/assets/schema_input.json
@@ -18,7 +18,7 @@
                 "format": "file-path",
                 "exists": true,
                 "pattern": "^\\S+$",
-                "errorMessage": "Image path must be provided, cannot contain spaces and must have extension '.tif' or '.tiff'"
+                "errorMessage": "Image path must be provided, cannot contain spaces."
             }
         },
         "required": ["sample", "image"]

diff --git a/nextflow.config b/nextflow.config
@@ -28,8 +28,8 @@ params {
     bigtiff = null
     pyramid_resolutions = null
     pyramid_scale = null
-    singularityCache = "/dodrio/scratch/projects/2024_300/twoller/.singularityCache"
-    cluster_options = "--mem-per-cpu=3140 --cpus-per-task=4 "
+    singularityCache = "/dodrio/scratch/projects/2024_300/oezdemir/repositories/bfflow/.singularityCache"
+    // cluster_options = "--mem-per-cpu=3140 --cpus-per-task=4 "
 
     // Boilerplate options
     outdir                       = null
@@ -119,7 +119,7 @@ profiles {
         singularity.autoMounts = true
         process {
           executor = 'slurm'
-          clusterOptions = "${params.cluster_options}"
+          //clusterOptions = "${params.cluster_options}"
           containerOptions = "-B ${baseDir} -B $PWD -B $HOME"
         }
     }