Preparing for release 0.3.2

SNPsplit

@@ -25,7 +25,7 @@ use Cwd;
 
 
 ## Reading in a BAM or SAM file
-my $pipeline_version = '0.3.1_dev';
+my $pipeline_version = '0.3.2';
 my $parent_dir = getcwd();
 my ($snp_file,$no_sort,$verbose,$samtools_path,$bam,$paired,$hic,$conflict,$output_dir,$singletons,$bisulfite) = process_commandline ();
 my %snps; # storing SNP position and sequence information for all SNPs

SNPsplit_genome_preparation

@@ -27,7 +27,7 @@ use Cwd;
 ### it will work with any other supplied VCF file.
 
 ## Reading in a BAM or SAM file
-my $pipeline_version = '0.3.1_dev';
+my $pipeline_version = '0.3.2';
 my $parent_dir = getcwd();
 my ($vcf_file,$strain,$strain2,$strain_index,$strain2_index,$genome_folder,$skip_filtering,$nmasking,$full_sequence,$dual_hybrid,$genome_build) = process_commandline ();
 
@@ -1509,7 +1509,7 @@ the current working directory, so move there before invoking SNPsplit_genome_pre
 --version                     Displays version information and exits.
 
 
-                                                             Last modified: 03 November 2016
+                                                             Last modified: 1 March 2017
 
 EOF
     ;

tag2sort

@@ -7,7 +7,7 @@ use Cwd;
 use FindBin qw($Bin);
 use lib "$Bin/../lib";
 
-## This program is Copyright (C) 2014-16, Felix Krueger ([email protected])
+## This program is Copyright (C) 2014-17, Felix Krueger ([email protected])
 
 ## This program is free software: you can redistribute it and/or modify
 ## it under the terms of the GNU General Public License as published by
@@ -27,7 +27,7 @@ my %counting;
 my %fhs;
 
 my $parent_dir = getcwd();
-my $SNPsplit_version = '0.3.dev';
+my $SNPsplit_version = '0.3.2';
 
 my ($paired,$hic,$verbose,$samtools_path,$bam,$output_dir,$conflict,$singletons) = process_commandline();