fix: CLIN-3453 add missing resources for exomiser process in config #51
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This pull request adds default resource values for the exomiser process. The values are based on realistic exomiser reference data used in the QLIN environment.
While it may be possible to reduce resource requirements when using fewer exomiser data sources, we aim to provide defaults that are likely to work in most cases. These defaults should give users a good idea of the requirements for a production deployment.
Tests
Run the pipeline locally:
nextflow run main.nf -profile test,docker
Juno Tests
Run the pipeline in Juno. Check that the allocated resources on the exomiser pod are matching the configuration.
PR checklist
nf-core lint
).nextflow run . -profile test,docker --outdir <OUTDIR>
).nextflow run . -profile debug,test,docker --outdir <OUTDIR>
).docs/usage.md
is updated.docs/output.md
is updated.docs/reference_data.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).