feat: CQDG-895 add new study metadata

Ferlab-Ste-Justine · Oct 21, 2024 · 35b5194 · 35b5194
1 parent 10faf33
commit 35b5194
Show file tree

Hide file tree

Showing 3 changed files with 332 additions and 1 deletion.
diff --git a/src/graphql/study/extendedMapping.ts b/src/graphql/study/extendedMapping.ts
@@ -1,3 +1,5 @@
+import AggregationsType, { NumericAggregationsType } from '@ferlab/next/lib/common/types/aggregationsType';
+
 const extendedMapping = [
   {
     unit: null,
@@ -558,6 +560,294 @@ const extendedMapping = [
     gqlId: 'cqdg::Study::extended::study_version',
     primaryKey: false,
   },
+  {
+    unit: null,
+    displayValues: {},
+    quickSearchEnabled: false,
+    field: 'data_collection_methods',
+    displayName: 'Data Collection Methods',
+    active: false,
+    isArray: true,
+    rangeStep: 1,
+    type: 'keyword',
+    gqlId: 'cqdg::Study::extended::data_collection_methods',
+    primaryKey: false,
+  },
+  {
+    unit: null,
+    displayValues: {},
+    quickSearchEnabled: false,
+    field: 'study_designs',
+    displayName: 'Design',
+    active: false,
+    isArray: true,
+    rangeStep: 1,
+    type: 'keyword',
+    gqlId: 'cqdg::Study::extended::study_designs',
+    primaryKey: false,
+  },
+  {
+    unit: null,
+    displayValues: {},
+    quickSearchEnabled: false,
+    field: 'restricted',
+    displayName: 'Restricted',
+    active: false,
+    isArray: false,
+    rangeStep: 1,
+    type: 'keyword',
+    gqlId: 'cqdg::Study::extended::restricted',
+    primaryKey: false,
+  },
+  {
+    unit: null,
+    displayValues: {},
+    quickSearchEnabled: false,
+    field: 'study_designs',
+    displayName: 'Study Designs',
+    active: false,
+    isArray: true,
+    rangeStep: 1,
+    type: 'keyword',
+    gqlId: 'cqdg::Study::extended::study_designs',
+    primaryKey: false,
+  },
+  {
+    unit: null,
+    displayValues: {},
+    quickSearchEnabled: false,
+    field: 'data_collection_methods',
+    displayName: 'Data Collection Methods',
+    active: false,
+    isArray: true,
+    rangeStep: 1,
+    type: 'keyword',
+    gqlId: 'cqdg::Study::extended::data_collection_methods',
+    primaryKey: false,
+  },
+  {
+    unit: null,
+    displayValues: {},
+    quickSearchEnabled: false,
+    field: 'expected_number_participants',
+    displayName: 'Expected Number Participants',
+    active: false,
+    isArray: false,
+    rangeStep: 1,
+    type: 'keyword',
+    gqlId: 'cqdg::Study::extended::expected_number_participants',
+    primaryKey: false,
+  },
+
+  {
+    unit: null,
+    displayValues: {},
+    quickSearchEnabled: false,
+    field: 'expected_number_biospecimens',
+    displayName: 'Expected Number Biospecimens',
+    active: false,
+    isArray: false,
+    rangeStep: 1,
+    type: 'keyword',
+    gqlId: 'cqdg::Study::extended::expected_number_biospecimens',
+    primaryKey: false,
+  },
+  {
+    unit: null,
+    displayValues: {},
+    quickSearchEnabled: false,
+    field: 'expected_number_files',
+    displayName: 'Expected Number Files',
+    active: false,
+    isArray: false,
+    rangeStep: 1,
+    type: 'keyword',
+    gqlId: 'cqdg::Study::extended::expected_number_files',
+    primaryKey: false,
+  },
+  {
+    unit: null,
+    displayValues: {},
+    quickSearchEnabled: false,
+    field: 'restricted_number_participants',
+    displayName: 'Restricted Number Participants',
+    active: false,
+    isArray: false,
+    rangeStep: 1,
+    type: 'keyword',
+    gqlId: 'cqdg::Study::extended::restricted_number_participants',
+    primaryKey: false,
+  },
+  {
+    unit: null,
+    displayValues: {},
+    quickSearchEnabled: false,
+    field: 'restricted_number_biospecimens',
+    displayName: 'Restricted Number Biospecimens',
+    active: false,
+    isArray: false,
+    rangeStep: 1,
+    type: 'keyword',
+    gqlId: 'cqdg::Study::extended::restricted_number_biospecimens',
+    primaryKey: false,
+  },
+  {
+    unit: null,
+    displayValues: {},
+    quickSearchEnabled: false,
+    field: 'restricted_number_files',
+    displayName: 'Restricted Number Files',
+    active: false,
+    isArray: false,
+    rangeStep: 1,
+    type: 'keyword',
+    gqlId: 'cqdg::Study::extended::restricted_number_files',
+    primaryKey: false,
+  },
+
+  {
+    unit: null,
+    displayValues: {},
+    quickSearchEnabled: false,
+    field: 'principal_investigators',
+    displayName: 'Principal Investigators',
+    active: false,
+    isArray: true,
+    rangeStep: 1,
+    type: 'keyword',
+    gqlId: 'cqdg::Study::extended::principal_investigators',
+    primaryKey: false,
+  },
+  {
+    unit: null,
+    displayValues: {},
+    quickSearchEnabled: false,
+    field: 'contact_names',
+    displayName: 'Contact Names',
+    active: false,
+    isArray: true,
+    rangeStep: 1,
+    type: 'keyword',
+    gqlId: 'cqdg::Study::extended::contact_names',
+    primaryKey: false,
+  },
+  {
+    unit: null,
+    displayValues: {},
+    quickSearchEnabled: false,
+    field: 'contact_extensions',
+    displayName: 'Contact Extensions',
+    active: false,
+    isArray: true,
+    rangeStep: 1,
+    type: 'keyword',
+    gqlId: 'cqdg::Study::extended::contact_extensions',
+    primaryKey: false,
+  },
+  {
+    unit: null,
+    displayValues: {},
+    quickSearchEnabled: false,
+    field: 'contact_institutions',
+    displayName: 'Contact Institutions',
+    active: false,
+    isArray: true,
+    rangeStep: 1,
+    type: 'keyword',
+    gqlId: 'cqdg::Study::extended::contact_institutions',
+    primaryKey: false,
+  },
+  {
+    unit: null,
+    displayValues: {},
+    quickSearchEnabled: false,
+    field: 'contact_emails',
+    displayName: 'Contact Emails',
+    active: false,
+    isArray: true,
+    rangeStep: 1,
+    type: 'keyword',
+    gqlId: 'cqdg::Study::extended::contact_emails',
+    primaryKey: false,
+  },
+  {
+    unit: null,
+    displayValues: {},
+    quickSearchEnabled: false,
+    field: 'telecom',
+    displayName: 'Telecom',
+    active: false,
+    isArray: false,
+    rangeStep: 1,
+    type: 'keyword',
+    gqlId: 'cqdg::Study::extended::telecom',
+    primaryKey: false,
+  },
+  {
+    unit: null,
+    displayValues: {},
+    quickSearchEnabled: false,
+    field: 'website',
+    displayName: 'Website',
+    active: false,
+    isArray: true,
+    rangeStep: 1,
+    type: 'keyword',
+    gqlId: 'cqdg::Study::extended::website',
+    primaryKey: false,
+  },
+  {
+    unit: null,
+    displayValues: {},
+    quickSearchEnabled: false,
+    field: 'funding_sources',
+    displayName: 'Funding Sources',
+    active: false,
+    isArray: true,
+    rangeStep: 1,
+    type: 'keyword',
+    gqlId: 'cqdg::Study::extended::funding_sources',
+    primaryKey: false,
+  },
+  {
+    unit: null,
+    displayValues: {},
+    quickSearchEnabled: false,
+    field: 'citation_statement',
+    displayName: 'Citation Statement',
+    active: false,
+    isArray: false,
+    rangeStep: 1,
+    type: 'keyword',
+    gqlId: 'cqdg::Study::extended::citation_statement',
+    primaryKey: false,
+  },
+  {
+    unit: null,
+    displayValues: {},
+    quickSearchEnabled: false,
+    field: 'selection_criteria',
+    displayName: 'Selection Criteria',
+    active: false,
+    isArray: false,
+    rangeStep: 1,
+    type: 'keyword',
+    gqlId: 'cqdg::Study::extended::selection_criteria',
+    primaryKey: false,
+  },
+  {
+    unit: null,
+    displayValues: {},
+    quickSearchEnabled: false,
+    field: 'expected_items',
+    displayName: 'Expected Items',
+    active: false,
+    isArray: true,
+    rangeStep: 1,
+    type: 'keyword',
+    gqlId: 'cqdg::Study::extended::expected_items',
+    primaryKey: false,
+  },
 ];
 
 export default extendedMapping;
diff --git a/src/graphql/study/types/study.ts b/src/graphql/study/types/study.ts
@@ -58,12 +58,32 @@ export const StudyType = new GraphQLObjectType({
     security: { type: GraphQLString },
     status: { type: GraphQLString },
     study_version: { type: GraphQLString },
-    contact: { type: StudyContactType },
+    access_authority: { type: StudyContactType },
     data_access_codes: { type: DataAccessCodesType },
     data_categories: { type: DataCategoriesType },
     data_types: { type: DataTypesType },
     datasets: { type: DataSetsType },
     experimental_strategies: { type: ExperimentalStrategiesType },
+    restricted: { type: GraphQLBoolean },
+    study_designs: { type: new GraphQLList(GraphQLString) },
+    data_collection_methods: { type: new GraphQLList(GraphQLString) },
+    expected_number_participants: { type: GraphQLFloat },
+    expected_number_biospecimens: { type: GraphQLFloat },
+    expected_number_files: { type: GraphQLFloat },
+    restricted_number_participants: { type: GraphQLFloat },
+    restricted_number_biospecimens: { type: GraphQLFloat },
+    restricted_number_files: { type: GraphQLFloat },
+    principal_investigators: { type: new GraphQLList(GraphQLString) },
+    contact_names: { type: new GraphQLList(GraphQLString) },
+    contact_extensions: { type: new GraphQLList(GraphQLString) },
+    contact_institutions: { type: new GraphQLList(GraphQLString) },
+    contact_emails: { type: new GraphQLList(GraphQLString) },
+    telecom: { type: GraphQLString },
+    websites: { type: new GraphQLList(GraphQLString), resolve: (parent) => parent.website },
+    funding_sources: { type: new GraphQLList(GraphQLString) },
+    citation_statement: { type: GraphQLString },
+    selection_criteria: { type: GraphQLString },
+    expected_items: { type: new GraphQLList(GraphQLString) },
   }),
   extensions: {
     nestedFields: ['data_categories', 'data_types', 'datasets', 'experimental_strategies'],

diff --git a/src/graphql/study/types/studyAgg.ts b/src/graphql/study/types/studyAgg.ts
@@ -8,6 +8,7 @@ const StudyAggType = new GraphQLObjectType({
     contact__value: { type: AggregationsType },
     data_access_codes__access_limitations: { type: AggregationsType },
     data_access_codes__access_requirements: { type: AggregationsType },
+    data_categories__data_category: { type: AggregationsType },
     data_categories__participant_count: { type: NumericAggregationsType },
     data_category: { type: AggregationsType },
     data_types__data_type: { type: AggregationsType },
@@ -39,6 +40,26 @@ const StudyAggType = new GraphQLObjectType({
     study_code: { type: AggregationsType },
     study_id: { type: AggregationsType },
     study_version: { type: AggregationsType },
+    restricted: { type: AggregationsType },
+    study_designs: { type: AggregationsType },
+    data_collection_methods: { type: AggregationsType },
+    expected_number_participants: { type: NumericAggregationsType },
+    expected_number_biospecimens: { type: NumericAggregationsType },
+    expected_number_files: { type: NumericAggregationsType },
+    restricted_number_participants: { type: NumericAggregationsType },
+    restricted_number_biospecimens: { type: NumericAggregationsType },
+    restricted_number_files: { type: NumericAggregationsType },
+    principal_investigators: { type: AggregationsType },
+    contact_names: { type: AggregationsType },
+    contact_extensions: { type: AggregationsType },
+    contact_institutions: { type: AggregationsType },
+    contact_emails: { type: AggregationsType },
+    telecom: { type: AggregationsType },
+    website: { type: AggregationsType },
+    funding_sources: { type: AggregationsType },
+    citation_statement: { type: AggregationsType },
+    selection_criteria: { type: AggregationsType },
+    expected_items: { type: AggregationsType },
   },
 });