Merge pull request #249 from Ferlab-Ste-Justine/fix/clin-2536

fix: CLIN-2536 add missing normalized gnomad 4 config in PublicTables
Ferlab-Ste-Justine · Dec 10, 2024 · 44efe2a · 44efe2a
2 parents 3686299 + 15582e0
commit 44efe2a
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/datalake-spark3/src/main/scala/bio/ferlab/datalake/spark3/publictables/PublicDatasets.scala b/datalake-spark3/src/main/scala/bio/ferlab/datalake/spark3/publictables/PublicDatasets.scala
@@ -51,6 +51,7 @@ case class PublicDatasets(alias: String, tableDatabase: Option[String], viewData
           DatasetConf("normalized_gnomad_exomes_v2_1_1"    , alias, "/public/gnomad_exomes_v2_1_1_liftover_grch38" , DELTA, OverWrite , partitionby = List("chromosome"), table = table("gnomad_exomes_v2_1_1")     , view = view("gnomad_exomes_v2_1_1")),
           DatasetConf("normalized_gnomad_constraint_v2_1_1", alias, "/public/gnomad_constraint_v2_1_1"             , DELTA, OverWrite , partitionby = List("chromosome"), table = table("gnomad_constraint_v_2_1_1"), view = view("gnomad_constraint_v_2_1_1")),
           DatasetConf("normalized_gnomad_genomes_v3"       , alias, "/public/gnomad_genomes_v3"                    , DELTA, OverWrite , partitionby = List("chromosome"), table = table("gnomad_genomes_v3")        , view = view("gnomad_genomes_v3")),
+          DatasetConf("normalized_gnomad_genomes_v4"       , alias, "/public/gnomad_genomes_v4"                    , DELTA, OverWrite , partitionby = List("chromosome"), table = table("gnomad_genomes_v4")        , view = view("gnomad_genomes_v4")),
           DatasetConf("normalized_human_genes"             , alias, "/public/human_genes"                          , DELTA, OverWrite , partitionby = List()            , table = table("human_genes")              , view = view("human_genes")),
           DatasetConf("normalized_hpo_gene_set"            , alias, "/public/hpo_gene_set"                         , DELTA, OverWrite , partitionby = List()            , table = table("hpo_gene_set")             , view = view("hpo_gene_set")),
           DatasetConf("normalized_omim_gene_set"           , alias, "/public/omim_gene_set"                        , DELTA, OverWrite , partitionby = List()            , table = table("omim_gene_set")            , view = view("omim_gene_set")),