test R-checks

Flavjack · Apr 25, 2021 · c7d4abc · c7d4abc
1 parent e56c6c8
commit c7d4abc
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Showing 5 changed files with 24 additions and 50 deletions.
diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
@@ -1,7 +1,3 @@
-# NOTE: This workflow is overkill for most R packages
-# check-standard.yaml is likely a better choice
-# usethis::use_github_action("check-standard") will install it.
-#
 # For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag.
 # https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions
 on:
@@ -26,82 +22,65 @@ jobs:
       fail-fast: false
       matrix:
         config:
-          - {os: macOS-latest,   r: 'release'}
           - {os: windows-latest, r: 'release'}
-          - {os: windows-latest, r: '3.6'}
-          - {os: ubuntu-18.04,   r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest", http-user-agent: "R/4.0.0 (ubuntu-18.04) R (4.0.0 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions" }
-          - {os: ubuntu-18.04,   r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"}
-          - {os: ubuntu-18.04,   r: 'oldrel',  rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"}
-          - {os: ubuntu-18.04,   r: '3.5',     rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"}
-          - {os: ubuntu-18.04,   r: '3.4',     rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"}
-          - {os: ubuntu-18.04,   r: '3.3',     rspm: "https://packagemanager.rstudio.com/cran/__linux__/bionic/latest"}
+          - {os: macOS-latest, r: 'release'}
+          - {os: ubuntu-20.04, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
+          - {os: ubuntu-20.04, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"}
 
     env:
+      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
       RSPM: ${{ matrix.config.rspm }}
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
 
     steps:
       - uses: actions/checkout@v2
 
       - uses: r-lib/actions/setup-r@v1
-        id: install-r
         with:
           r-version: ${{ matrix.config.r }}
-          http-user-agent: ${{ matrix.config.http-user-agent }}
 
       - uses: r-lib/actions/setup-pandoc@v1
 
-      - name: Install pak and query dependencies
+      - name: Query dependencies
         run: |
-          install.packages("pak", repos = "https://r-lib.github.io/p/pak/dev/")
-          saveRDS(pak::pkg_deps("local::.", dependencies = TRUE), ".github/r-depends.rds")
+          install.packages('remotes')
+          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
+          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
         shell: Rscript {0}
 
       - name: Restore R package cache
+        if: runner.os != 'Windows'
         uses: actions/cache@v2
         with:
-          path: |
-            ${{ env.R_LIBS_USER }}/*
-            !${{ env.R_LIBS_USER }}/pak
-          key: ${{ matrix.config.os }}-${{ steps.install-r.outputs.installed-r-version }}-1-${{ hashFiles('.github/r-depends.rds') }}
-          restore-keys: ${{ matrix.config.os }}-${{ steps.install-r.outputs.installed-r-version }}-1-
+          path: ${{ env.R_LIBS_USER }}
+          key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
+          restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-
 
       - name: Install system dependencies
         if: runner.os == 'Linux'
         run: |
-          pak::local_system_requirements(execute = TRUE)
-          pak::pkg_system_requirements("rcmdcheck", execute = TRUE)
-        shell: Rscript {0}
+          while read -r cmd
+          do
+            eval sudo $cmd
+          done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))')
 
       - name: Install dependencies
         run: |
-          pak::local_install_dev_deps(upgrade = TRUE)
-          pak::pkg_install("rcmdcheck")
-        shell: Rscript {0}
-
-      - name: Session info
-        run: |
-          options(width = 100)
-          pkgs <- installed.packages()[, "Package"]
-          sessioninfo::session_info(pkgs, include_base = TRUE)
+          remotes::install_deps(dependencies = TRUE)
+          remotes::install_cran("rcmdcheck")
         shell: Rscript {0}
 
       - name: Check
         env:
-          _R_CHECK_CRAN_INCOMING_: false
+          _R_CHECK_CRAN_INCOMING_REMOTE_: false
         run: |
           options(crayon.enabled = TRUE)
           rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check")
         shell: Rscript {0}
 
-      - name: Show testthat output
-        if: always()
-        run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true
-        shell: bash
-
       - name: Upload check results
         if: failure()
         uses: actions/upload-artifact@main
         with:
-          name: ${{ matrix.config.os }}-r${{ matrix.config.r }}-results
+          name: ${{ runner.os }}-r${{ matrix.config.r }}-results
           path: check
diff --git a/README.Rmd b/README.Rmd
@@ -18,8 +18,7 @@ knitr::opts_chunk$set(
 <!-- badges: start -->
 [![CRAN status](https://www.r-pkg.org/badges/version/inti)](https://CRAN.R-project.org/package=inti)
 [![DOI](https://zenodo.org/badge/82401374.svg)](https://zenodo.org/badge/latestdoi/82401374)
-[![Travis build status](https://travis-ci.org/Flavjack/inti.svg?branch=master)](https://travis-ci.org/Flavjack/inti)
-[![AppVeyor build status](https://ci.appveyor.com/api/projects/status/github/Flavjack/inti?branch=master&svg=true)](https://ci.appveyor.com/project/Flavjack/inti)
+[![R-CMD-check](https://github.com/Flavjack/inti/workflows/R-CMD-check/badge.svg)](https://github.com/Flavjack/inti/actions)
 [![CRAN RStudio mirror downloads](https://cranlogs.r-pkg.org/badges/grand-total/inti?color=brightgreen)](https://r-pkg.org/pkg/inti)
 <!-- badges: end -->
 

diff --git a/README.md b/README.md
@@ -8,10 +8,7 @@
 [![CRAN
 status](https://www.r-pkg.org/badges/version/inti)](https://CRAN.R-project.org/package=inti)
 [![DOI](https://zenodo.org/badge/82401374.svg)](https://zenodo.org/badge/latestdoi/82401374)
-[![Travis build
-status](https://travis-ci.org/Flavjack/inti.svg?branch=master)](https://travis-ci.org/Flavjack/inti)
-[![AppVeyor build
-status](https://ci.appveyor.com/api/projects/status/github/Flavjack/inti?branch=master&svg=true)](https://ci.appveyor.com/project/Flavjack/inti)
+[![R-CMD-check](https://github.com/Flavjack/inti/workflows/R-CMD-check/badge.svg)](https://github.com/Flavjack/inti/actions)
 [![CRAN RStudio mirror
 downloads](https://cranlogs.r-pkg.org/badges/grand-total/inti?color=brightgreen)](https://r-pkg.org/pkg/inti)
 <!-- badges: end -->

diff --git a/docs/index.html b/docs/index.html
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
@@ -6,7 +6,7 @@ articles:
   heritability: heritability.html
   policy: policy.html
   yupana: yupana.html
-last_built: 2021-04-25T08:41Z
+last_built: 2021-04-25T09:25Z
 urls:
   reference: https://inkaverse.com//reference
   article: https://inkaverse.com//articles