cbioportal-core

Many of the Java classes here are in use by the main cbioportal/cbioportal codebase, the metaImport.py Python scripts are all used for importing. We decided to move them all to a single repo so that we might deprecate them in the future once we have come up with a good plan for replacing them.

This repo contains:

• many old Java classes for interacting with the database
• The metaImport.py Python script used for importing

Inclusion in main codebase

The cbioportal-core code is currently included in the final Docker image during the Docker build process: https://github.com/cBioPortal/cbioportal/blob/master/docker/web-and-data/Dockerfile#L48