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Welcome to the home of Crick Advanced Light Microscopy (CALM) Image Analysis.
We're a small team within the CALM, composed of three full time image analysts: Dave Barry, Todd Fallesen and Sara Salgueiro Torres. Others in the team are also quite useful for image analysis. Camille Charoy is an expert at Imaris and HighPlex imaging data, Greg Mashanov is an expert at single molecule analysis, Matt Renshaw is an expert with Pycromanager, Rocco D'Antuono is adept at napari and Donald Bell is our QuPath Guru. For if you're planning on curating a lot of imaging data, please contact Ken Ho for use of Omero!
We just hired a new Image Analyst, Sara Salgueiro Torres! She comes to us from UCL and will be handling a lot of your Fiji and Image Analysis problems!
- November 8 2024: CellProfiler with Todd Fallesen
- November 12 2024: QuPath with Donald Bell
- December 6 2024: Fiji with Sonia Spitzer, Sara Salgueiro Torres, and Lotanna Amazu
- January 10 2025: Omero and Omero Fig with Ken Ho and Kurt Anderson
- February 7 2025: TBC
- March 7 2025: TBC (Hopefully Imaris!)
- April 4 2025: HPC/StarDist with Todd Fallesen
- May 2 2025: Napari with Rocco D'Antuono
- June 6 2025: TBC
Our monthly image analysis club meetings are back! They are from 1:30-3pm in Meeting Room 7. No need to sign up, just show up!
- November 15 2024: 3D Visualization: Sara Salguiero Torres and Jakob (?)
- December 13 2024: Parallelization and Dask: Cameron Shand and Nathan Day
- January 17 2025: Segmentation: Martin Jones and Millie Thackray
- February 14 2025: Registration: Dan Gunton and Matous
- March 14 2025: Classification: Georgia Whitton and ???
- April 11 2025: Tracking: Nathan and ??
- May 9 2025: Pipelines: Georgia Whitton and Cameron Shand
- June 13 2025: External speaker! Let's find someone we're interested in!
- CALM Image Analysis Workstations
- Our Supported Software
- CALM Image Analysis Workstations
- Courses
- Planning a Project with CALM Image Analysis.
- Past Projects, take a look at what we've done!
Image Analysis Club Free to join for anyone at the Crick!