added some tests

GATB · Nov 27, 2018 · cfc106d · cfc106d
1 parent 83f1574
commit cfc106d
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diff --git a/example/circular_unitigs_unittests/CMD b/example/circular_unitigs_unittests/CMD
@@ -0,0 +1,9 @@
+#!/bin/bash
+if [ "$1" == "3" ]
+then
+    ../../build/bcalm -in test3.fa -kmer-size 7 -abundance-min 1 -minimizer-size 5
+    exit 0
+fi
+
+../../build/bcalm -in test1.fa -kmer-size 7 -abundance-min 1 -minimizer-size 5
+
diff --git a/example/circular_unitigs_unittests/README b/example/circular_unitigs_unittests/README
@@ -0,0 +1 @@
+addressing the longstanding issue that bcalm2 doesnt assemble circular contigs
diff --git a/example/circular_unitigs_unittests/test1.fa b/example/circular_unitigs_unittests/test1.fa
@@ -0,0 +1,2 @@
+>a perfectly circular unitig, k=7; is same as test3 but without the random crap
+ACTTAGCGGACTTAGC
diff --git a/example/circular_unitigs_unittests/test2.fa b/example/circular_unitigs_unittests/test2.fa
@@ -0,0 +1,3 @@
+>a polyA tail
+ACCATGATTCAGAAAAAAAAA
+
diff --git a/example/circular_unitigs_unittests/test3.fa b/example/circular_unitigs_unittests/test3.fa
@@ -0,0 +1,4 @@
+>random crap somehow makes the kmer counting put everything into the same bucket
+ACTAAA
+>a perfectly circular unitig
+ACTTAGCGGACTTAGC
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1 @@
		addressing the longstanding issue that bcalm2 doesnt assemble circular contigs
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1,2 @@
		>a perfectly circular unitig, k=7; is same as test3 but without the random crap
		ACTTAGCGGACTTAGC