fixing PD deficit function #159

Workflow file for this run

.github/workflows/_pkgdown.yml at 1a1385c







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	<ul id="jump-to-results" role="listbox" class="p-0 m-0 js-navigation-container jump-to-suggestions-results-container js-jump-to-suggestions-results-container">


	<li class="d-flex flex-justify-start flex-items-center p-0 f5 navigation-item js-navigation-item js-jump-to-scoped-search d-none" role="option">
	<a tabindex="-1" class="no-underline d-flex flex-auto flex-items-center jump-to-suggestions-path js-jump-to-suggestion-path js-navigation-open p-2" href="" data-item-type="scoped_search">
	<div class="jump-to-octicon js-jump-to-octicon flex-shrink-0 mr-2 text-center d-none">
	<svg height="16" width="16" class="octicon octicon-repo flex-shrink-0 js-jump-to-octicon-repo d-none" title="Repository" aria-label="Repository" viewBox="0 0 16 16" version="1.1" role="img"><path fill-rule="evenodd" d="M2 2.5A2.5 2.5 0 014.5 0h8.75a.75.75 0 01.75.75v12.5a.75.75 0 01-.75.75h-2.5a.75.75 0 110-1.5h1.75v-2h-8a1 1 0 00-.714 1.7.75.75 0 01-1.072 1.05A2.495 2.495 0 012 11.5v-9zm10.5-1V9h-8c-.356 0-.694.074-1 .208V2.5a1 1 0 011-1h8zM5 12.25v3.25a.25.25 0 00.4.2l1.45-1.087a.25.25 0 01.3 0L8.6 15.7a.25.25 0 00.4-.2v-3.25a.25.25 0 00-.25-.25h-3.5a.25.25 0 00-.25.25z"></path></svg>
	<svg height="16" width="16" class="octicon octicon-project flex-shrink-0 js-jump-to-octicon-project d-none" title="Project" aria-label="Project" viewBox="0 0 16 16" version="1.1" role="img"><path fill-rule="evenodd" d="M1.75 0A1.75 1.75 0 000 1.75v12.5C0 15.216.784 16 1.75 16h12.5A1.75 1.75 0 0016 14.25V1.75A1.75 1.75 0 0014.25 0H1.75zM1.5 1.75a.25.25 0 01.25-.25h12.5a.25.25 0 01.25.25v12.5a.25.25 0 01-.25.25H1.75a.25.25 0 01-.25-.25V1.75zM11.75 3a.75.75 0 00-.75.75v7.5a.75.75 0 001.5 0v-7.5a.75.75 0 00-.75-.75zm-8.25.75a.75.75 0 011.5 0v5.5a.75.75 0 01-1.5 0v-5.5zM8 3a.75.75 0 00-.75.75v3.5a.75.75 0 001.5 0v-3.5A.75.75 0 008 3z"></path></svg>
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	<img class="avatar mr-2 flex-shrink-0 js-jump-to-suggestion-avatar d-none" alt="" aria-label="Team" src="" width="28" height="28">

	<div class="jump-to-suggestion-name js-jump-to-suggestion-name flex-auto overflow-hidden text-left no-wrap css-truncate css-truncate-target">
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	<div class="border rounded-1 flex-shrink-0 color-bg-tertiary px-1 color-text-tertiary ml-1 f6 d-none js-jump-to-badge-search">
	<span class="js-jump-to-badge-search-text-default d-none" aria-label="in this repository">
	In this repository
	</span>
	<span class="js-jump-to-badge-search-text-global d-none" aria-label="in all of GitHub">
	All GitHub
	</span>
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	<div aria-hidden="true" class="border rounded-1 flex-shrink-0 color-bg-tertiary px-1 color-text-tertiary ml-1 f6 d-none d-on-nav-focus js-jump-to-badge-jump">
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	<li class="d-flex flex-justify-start flex-items-center p-0 f5 navigation-item js-navigation-item js-jump-to-owner-scoped-search d-none" role="option">
	<a tabindex="-1" class="no-underline d-flex flex-auto flex-items-center jump-to-suggestions-path js-jump-to-suggestion-path js-navigation-open p-2" href="" data-item-type="owner_scoped_search">
	<div class="jump-to-octicon js-jump-to-octicon flex-shrink-0 mr-2 text-center d-none">
	<svg height="16" width="16" class="octicon octicon-repo flex-shrink-0 js-jump-to-octicon-repo d-none" title="Repository" aria-label="Repository" viewBox="0 0 16 16" version="1.1" role="img"><path fill-rule="evenodd" d="M2 2.5A2.5 2.5 0 014.5 0h8.75a.75.75 0 01.75.75v12.5a.75.75 0 01-.75.75h-2.5a.75.75 0 110-1.5h1.75v-2h-8a1 1 0 00-.714 1.7.75.75 0 01-1.072 1.05A2.495 2.495 0 012 11.5v-9zm10.5-1V9h-8c-.356 0-.694.074-1 .208V2.5a1 1 0 011-1h8zM5 12.25v3.25a.25.25 0 00.4.2l1.45-1.087a.25.25 0 01.3 0L8.6 15.7a.25.25 0 00.4-.2v-3.25a.25.25 0 00-.25-.25h-3.5a.25.25 0 00-.25.25z"></path></svg>
	<svg height="16" width="16" class="octicon octicon-project flex-shrink-0 js-jump-to-octicon-project d-none" title="Project" aria-label="Project" viewBox="0 0 16 16" version="1.1" role="img"><path fill-rule="evenodd" d="M1.75 0A1.75 1.75 0 000 1.75v12.5C0 15.216.784 16 1.75 16h12.5A1.75 1.75 0 0016 14.25V1.75A1.75 1.75 0 0014.25 0H1.75zM1.5 1.75a.25.25 0 01.25-.25h12.5a.25.25 0 01.25.25v12.5a.25.25 0 01-.25.25H1.75a.25.25 0 01-.25-.25V1.75zM11.75 3a.75.75 0 00-.75.75v7.5a.75.75 0 001.5 0v-7.5a.75.75 0 00-.75-.75zm-8.25.75a.75.75 0 011.5 0v5.5a.75.75 0 01-1.5 0v-5.5zM8 3a.75.75 0 00-.75.75v3.5a.75.75 0 001.5 0v-3.5A.75.75 0 008 3z"></path></svg>
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	<div class="jump-to-suggestion-name js-jump-to-suggestion-name flex-auto overflow-hidden text-left no-wrap css-truncate css-truncate-target">
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	<div class="border rounded-1 flex-shrink-0 color-bg-tertiary px-1 color-text-tertiary ml-1 f6 d-none js-jump-to-badge-search">
	<span class="js-jump-to-badge-search-text-default d-none" aria-label="in this user">
	In this user
	</span>
	<span class="js-jump-to-badge-search-text-global d-none" aria-label="in all of GitHub">
	All GitHub
	</span>
	<span aria-hidden="true" class="d-inline-block ml-1 v-align-middle">↵</span>
	</div>

	<div aria-hidden="true" class="border rounded-1 flex-shrink-0 color-bg-tertiary px-1 color-text-tertiary ml-1 f6 d-none d-on-nav-focus js-jump-to-badge-jump">
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	<a tabindex="-1" class="no-underline d-flex flex-auto flex-items-center jump-to-suggestions-path js-jump-to-suggestion-path js-navigation-open p-2" href="" data-item-type="global_search">
	<div class="jump-to-octicon js-jump-to-octicon flex-shrink-0 mr-2 text-center d-none">
	<svg height="16" width="16" class="octicon octicon-repo flex-shrink-0 js-jump-to-octicon-repo d-none" title="Repository" aria-label="Repository" viewBox="0 0 16 16" version="1.1" role="img"><path fill-rule="evenodd" d="M2 2.5A2.5 2.5 0 014.5 0h8.75a.75.75 0 01.75.75v12.5a.75.75 0 01-.75.75h-2.5a.75.75 0 110-1.5h1.75v-2h-8a1 1 0 00-.714 1.7.75.75 0 01-1.072 1.05A2.495 2.495 0 012 11.5v-9zm10.5-1V9h-8c-.356 0-.694.074-1 .208V2.5a1 1 0 011-1h8zM5 12.25v3.25a.25.25 0 00.4.2l1.45-1.087a.25.25 0 01.3 0L8.6 15.7a.25.25 0 00.4-.2v-3.25a.25.25 0 00-.25-.25h-3.5a.25.25 0 00-.25.25z"></path></svg>
	<svg height="16" width="16" class="octicon octicon-project flex-shrink-0 js-jump-to-octicon-project d-none" title="Project" aria-label="Project" viewBox="0 0 16 16" version="1.1" role="img"><path fill-rule="evenodd" d="M1.75 0A1.75 1.75 0 000 1.75v12.5C0 15.216.784 16 1.75 16h12.5A1.75 1.75 0 0016 14.25V1.75A1.75 1.75 0 0014.25 0H1.75zM1.5 1.75a.25.25 0 01.25-.25h12.5a.25.25 0 01.25.25v12.5a.25.25 0 01-.25.25H1.75a.25.25 0 01-.25-.25V1.75zM11.75 3a.75.75 0 00-.75.75v7.5a.75.75 0 001.5 0v-7.5a.75.75 0 00-.75-.75zm-8.25.75a.75.75 0 011.5 0v5.5a.75.75 0 01-1.5 0v-5.5zM8 3a.75.75 0 00-.75.75v3.5a.75.75 0 001.5 0v-3.5A.75.75 0 008 3z"></path></svg>
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	</div>

	<img class="avatar mr-2 flex-shrink-0 js-jump-to-suggestion-avatar d-none" alt="" aria-label="Team" src="" width="28" height="28">

	<div class="jump-to-suggestion-name js-jump-to-suggestion-name flex-auto overflow-hidden text-left no-wrap css-truncate css-truncate-target">
	</div>

	<div class="border rounded-1 flex-shrink-0 color-bg-tertiary px-1 color-text-tertiary ml-1 f6 d-none js-jump-to-badge-search">
	<span class="js-jump-to-badge-search-text-default d-none" aria-label="in this repository">
	In this repository
	</span>
	<span class="js-jump-to-badge-search-text-global d-none" aria-label="in all of GitHub">
	All GitHub
	</span>
	<span aria-hidden="true" class="d-inline-block ml-1 v-align-middle">↵</span>
	</div>

	<div aria-hidden="true" class="border rounded-1 flex-shrink-0 color-bg-tertiary px-1 color-text-tertiary ml-1 f6 d-none d-on-nav-focus js-jump-to-badge-jump">
	Jump to
	<span class="d-inline-block ml-1 v-align-middle">↵</span>
	</div>
	</a>
	</li>


	</ul>

	</div>
	</label>
	</form> </div>
	</div>

	</div>

	<a href="/login?return_to=%2FGabrielNakamura%2FFishPhyloMaker%2Fblob%2Fmain%2F_pkgdown.yml"
	class="HeaderMenu-link flex-shrink-0 no-underline mr-3"
	data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"site header menu","repository_id":null,"auth_type":"SIGN_UP","originating_url":"https://github.com/GabrielNakamura/FishPhyloMaker/blob/main/_pkgdown.yml","user_id":null}}" data-hydro-click-hmac="9098ea499a08a670ac63ed17d108f640d00515c8ab12b16be84f41dd990ce1dc"
	data-ga-click="(Logged out) Header, clicked Sign in, text:sign-in">
	Sign in
	</a>
	<a href="/join?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E%2Fblob%2Fshow&source=header-repo&source_repo=GabrielNakamura%2FFishPhyloMaker"
	class="HeaderMenu-link flex-shrink-0 d-inline-block no-underline border color-border-tertiary rounded px-2 py-1 js-signup-redesign-target js-signup-redesign-control"
	data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"site header menu","repository_id":null,"auth_type":"SIGN_UP","originating_url":"https://github.com/GabrielNakamura/FishPhyloMaker/blob/main/_pkgdown.yml","user_id":null}}" data-hydro-click-hmac="9098ea499a08a670ac63ed17d108f640d00515c8ab12b16be84f41dd990ce1dc"
	data-hydro-click="{"event_type":"analytics.click","payload":{"category":"Sign up","action":"click to sign up for account","label":"ref_page:/<user-name>/<repo-name>/blob/show;ref_cta:Sign up;ref_loc:header logged out","originating_url":"https://github.com/GabrielNakamura/FishPhyloMaker/blob/main/_pkgdown.yml","user_id":null}}" data-hydro-click-hmac="899d0844c3829aa2df6f792c21e0eadae901bd67cf54b7a4019c7526d2251396"
	>
	Sign up
	</a>
	<a href="/join_next?ref_cta=Sign+up&ref_loc=header+logged+out&ref_page=%2F%3Cuser-name%3E%2F%3Crepo-name%3E%2Fblob%2Fshow&source=header-repo&source_repo=GabrielNakamura%2FFishPhyloMaker"
	class="HeaderMenu-link flex-shrink-0 d-inline-block no-underline border color-border-tertiary rounded-1 px-2 py-1 js-signup-redesign-target js-signup-redesign-variation"
	hidden
	data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"site header menu","repository_id":null,"auth_type":"SIGN_UP","originating_url":"https://github.com/GabrielNakamura/FishPhyloMaker/blob/main/_pkgdown.yml","user_id":null}}" data-hydro-click-hmac="9098ea499a08a670ac63ed17d108f640d00515c8ab12b16be84f41dd990ce1dc"
	data-hydro-click="{"event_type":"analytics.click","payload":{"category":"Sign up","action":"click to sign up for account","label":"ref_page:/<user-name>/<repo-name>/blob/show;ref_cta:Sign up;ref_loc:header logged out","originating_url":"https://github.com/GabrielNakamura/FishPhyloMaker/blob/main/_pkgdown.yml","user_id":null}}" data-hydro-click-hmac="899d0844c3829aa2df6f792c21e0eadae901bd67cf54b7a4019c7526d2251396"
	>
	Sign up
	</a>
	</div>
	</div>
	</div>
	</header>

	</div>

	<div id="start-of-content" class="show-on-focus"></div>





	<div data-pjax-replace id="js-flash-container">


	<template class="js-flash-template">
	<div class="flash flash-full {{ className }}">
	<div class=" px-2" >
	<button class="flash-close js-flash-close" type="button" aria-label="Dismiss this message">
	<svg class="octicon octicon-x" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M3.72 3.72a.75.75 0 011.06 0L8 6.94l3.22-3.22a.75.75 0 111.06 1.06L9.06 8l3.22 3.22a.75.75 0 11-1.06 1.06L8 9.06l-3.22 3.22a.75.75 0 01-1.06-1.06L6.94 8 3.72 4.78a.75.75 0 010-1.06z"></path></svg>
	</button>

	<div>{{ message }}</div>

	</div>
	</div>
	</template>
	</div>




	<include-fragment class="js-notification-shelf-include-fragment" data-base-src="https://github.com/notifications/beta/shelf"></include-fragment>




	<div
	class="application-main "
	data-commit-hovercards-enabled
	data-discussion-hovercards-enabled
	data-issue-and-pr-hovercards-enabled
	>
	<div itemscope itemtype="http://schema.org/SoftwareSourceCode" class="">
	<main id="js-repo-pjax-container" data-pjax-container >












	<div class="color-bg-secondary pt-3 hide-full-screen mb-5">

	<div class="d-flex mb-3 px-3 px-md-4 px-lg-5">

	<div class="flex-auto min-width-0 width-fit mr-3">
	<h1 class=" d-flex flex-wrap flex-items-center break-word f3 text-normal">
	<svg class="octicon octicon-repo color-text-secondary mr-2" viewBox="0 0 16 16" version="1.1" width="16" height="16" aria-hidden="true"><path fill-rule="evenodd" d="M2 2.5A2.5 2.5 0 014.5 0h8.75a.75.75 0 01.75.75v12.5a.75.75 0 01-.75.75h-2.5a.75.75 0 110-1.5h1.75v-2h-8a1 1 0 00-.714 1.7.75.75 0 01-1.072 1.05A2.495 2.495 0 012 11.5v-9zm10.5-1V9h-8c-.356 0-.694.074-1 .208V2.5a1 1 0 011-1h8zM5 12.25v3.25a.25.25 0 00.4.2l1.45-1.087a.25.25 0 01.3 0L8.6 15.7a.25.25 0 00.4-.2v-3.25a.25.25 0 00-.25-.25h-3.5a.25.25 0 00-.25.25z"></path></svg>
	<span class="author flex-self-stretch" itemprop="author">
	<a class="url fn" rel="author" data-hovercard-type="user" data-hovercard-url="/users/GabrielNakamura/hovercard" data-octo-click="hovercard-link-click" data-octo-dimensions="link_type:self" href="/GabrielNakamura">GabrielNakamura</a>
	</span>
	<span class="mx-1 flex-self-stretch color-text-secondary">/</span>
	<strong itemprop="name" class="mr-2 flex-self-stretch">
	<a data-pjax="#js-repo-pjax-container" href="/GabrielNakamura/FishPhyloMaker">FishPhyloMaker</a>
	</strong>

	</h1>


	</div>

	<ul class="pagehead-actions flex-shrink-0 d-none d-md-inline" style="padding: 2px 0;">

	<li>
	<a class="tooltipped tooltipped-s btn btn-sm" aria-label="You must be signed in to change notification settings" rel="nofollow" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"notification subscription menu watch","repository_id":null,"auth_type":"LOG_IN","originating_url":"https://github.com/GabrielNakamura/FishPhyloMaker/blob/main/_pkgdown.yml","user_id":null}}" data-hydro-click-hmac="80daeeeb8f35ee83b7820eb1f7b78fa5683c77ed1e7ad68df20c622eb9f46eb0" href="/login?return_to=%2FGabrielNakamura%2FFishPhyloMaker">
	<svg class="octicon octicon-bell" height="16" viewBox="0 0 16 16" version="1.1" width="16" aria-hidden="true"><path d="M8 16a2 2 0 001.985-1.75c.017-.137-.097-.25-.235-.25h-3.5c-.138 0-.252.113-.235.25A2 2 0 008 16z"></path><path fill-rule="evenodd" d="M8 1.5A3.5 3.5 0 004.5 5v2.947c0 .346-.102.683-.294.97l-1.703 2.556a.018.018 0 00-.003.01l.001.006c0 .002.002.004.004.006a.017.017 0 00.006.004l.007.001h10.964l.007-.001a.016.016 0 00.006-.004.016.016 0 00.004-.006l.001-.007a.017.017 0 00-.003-.01l-1.703-2.554a1.75 1.75 0 01-.294-.97V5A3.5 3.5 0 008 1.5zM3 5a5 5 0 0110 0v2.947c0 .05.015.098.042.139l1.703 2.555A1.518 1.518 0 0113.482 13H2.518a1.518 1.518 0 01-1.263-2.36l1.703-2.554A.25.25 0 003 7.947V5z"></path></svg>
	Notifications
	</a>
	</li>

	<li>
	<a class="btn btn-sm btn-with-count tooltipped tooltipped-s" aria-label="You must be signed in to star a repository" rel="nofollow" data-hydro-click="{"event_type":"authentication.click","payload":{"location_in_page":"star button","repository_id":336899540,"auth_type":"LOG_IN","originating_url":"https://github.com/GabrielNakamura/FishPhyloMaker/blob/main/_pkgdown.yml","user_id":null}}" data-hydro-click-hmac="717a09a7aaf1c72d632ed7cb52f35b79d6c71f6b0b72ed0ed7bf5a35c09305e7" href="/login?return_to=%2FGabrielNakamura%2FFishPhyloMaker">
	<svg class="octicon octicon-star v-align-text-bottom mr-1" height="16" viewBox="0 0 16 16" version="1.1" width="16" aria-hidden="true"><path fill-rule="evenodd" d="M8 .25a.75.75 0 01.673.418l1.882 3.815 4.21.612a.75.75 0 01.416 1.279l-3.046 2.97.719 4.192a.75.75 0 01-1.088.791L8 12.347l-3.766 1.98a.75.75 0 01-1.088-.79l.72-4.194L.818 6.374a.75.75 0 01.416-1.28l4.21-.611L7.327.668A.75.75 0 018 .25zm0 2.445L6.615 5.5a.75.75 0 01-.564.41l-3.097.45 2.24 2.184a.75.75 0 01.216.664l-.528 3.084 2.769-1.456a.75.75 0 01.698 0l2.77 1.456-.53-3.084a.75.75 0 01.216-.664l2.24-2.183-3.096-.45a.75.75 0 01-.564-.41L8 2.694v.001z"></path></svg>
	<span>
	Star
	</span></a>
	<a class="social-count js-social-count" href="/GabrielNakamura/FishPhyloMaker/stargazers"
	aria-label="0 users starred this repository">
	0
	</a>

	</li>

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