non-canonical intron branch update from master #714
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remove AUGUSTUS ENV overwrites from Dockerfile
Confirmed that singularity container does the SRA download
Fixing issue #782
…ubstitutions within awk command
within set_JAVA_PATH, generalize check for java version and prevent substitutions within awk command
fixed pseudo gene removal in evaluation script
fix for using other openjdk java (e.g. Zulu from Azul)
added link to odb12 sets
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Code from issue #368 by Tomas should be updated from master