Expose HMC walks with Gaussian and exponential distributions #141

	# dingo : a python library for metabolic networks sampling and analysis
	# dingo is part of GeomScale project

	# Copyright (c) 2021-2022 Vissarion Fisikopoulos

	# Licensed under GNU LGPL.3, see LICENCE file

	name: dingo-ubuntu

	on: [push, pull_request]

	jobs:
	build:

	runs-on: ubuntu-latest
	strategy:
	matrix:
	#python-version: [2.7, 3.5, 3.6, 3.7, 3.8]
	python-version: [3.8]

	steps:
	- uses: actions/checkout@v2
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v2
	with:
	python-version: ${{ matrix.python-version }}
	- name: Load submodules
	run: \|
	git submodule update --init;
	- name: Download and unzip the boost library
	run: \|
	wget -O boost_1_76_0.tar.bz2 https://boostorg.jfrog.io/artifactory/main/release/1.76.0/source/boost_1_76_0.tar.bz2;
	tar xjf boost_1_76_0.tar.bz2;
	rm boost_1_76_0.tar.bz2;
	- name: Install dependencies
	run: \|
	sudo apt-get install libsuitesparse-dev;
	curl -sSL https://install.python-poetry.org \| python3 - --version 1.3.2;
	poetry --version
	poetry show -v
	source $(poetry env info --path)/bin/activate
	poetry install;
	pip3 install numpy scipy;
	- name: Run tests
	run: \|
	poetry run python3 tests/fba.py;
	poetry run python3 tests/full_dimensional.py;
	poetry run python3 tests/max_ball.py;
	poetry run python3 tests/scaling.py;
	poetry run python3 tests/sampling.py;
	poetry run python3 tests/sampling_no_multiphase.py;
	# currently we do not test with gurobi
	# python3 tests/fast_implementation_test.py;

	#run all tests
	#python -m unittest discover test
	#TODO: use pytest

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