Renamed EPIC's vignette files.

GfellerLab · Mar 28, 2019 · dcdcbc5 · dcdcbc5
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,27 +1,27 @@
-Package: EPIC
-Type: Package
-Title: Estimate the Proportion of Immune and Cancer cells
-Version: 1.1.4
-Authors@R: as.person(c(
-  "Julien Racle <[email protected]> [aut, cre]",
-  "David Gfeller <[email protected]> [aut]"
-  ))
-Description: Package implementing EPIC method to estimate the proportion of
-    immune, stromal, endothelial and cancer or other cells from bulk gene
-    expression data.
-    It is based on reference gene expression profiles for the main non-malignant
-    cell types and it predicts the proportion of these cells and of the
-    remaining "other cells" (that are mostly cancer cells) for which no
-    reference profile is given.
-Depends:
-    R (>= 3.2.0)
-License: file LICENSE
-LazyData: TRUE
-RoxygenNote: 6.1.0
-Suggests:
-    testthat,
-    knitr,
-    rmarkdown
-Imports:
-    stats
-VignetteBuilder: knitr
+Package: EPIC
+Type: Package
+Title: Estimate the Proportion of Immune and Cancer cells
+Version: 1.1.5
+Authors@R: as.person(c(
+  "Julien Racle <[email protected]> [aut, cre]",
+  "David Gfeller <[email protected]> [aut]"
+  ))
+Description: Package implementing EPIC method to estimate the proportion of
+    immune, stromal, endothelial and cancer or other cells from bulk gene
+    expression data.
+    It is based on reference gene expression profiles for the main non-malignant
+    cell types and it predicts the proportion of these cells and of the
+    remaining "other cells" (that are mostly cancer cells) for which no
+    reference profile is given.
+Depends:
+    R (>= 3.2.0)
+License: file LICENSE
+LazyData: TRUE
+RoxygenNote: 6.1.0
+Suggests:
+    testthat,
+    knitr,
+    rmarkdown
+Imports:
+    stats
+VignetteBuilder: knitr
diff --git a/NEWS b/NEWS
@@ -1,3 +1,7 @@
+Version 1.1.5
+------------------------------------------------------------------------
+* Renamed EPIC's vignette to call it through "vignette('EPIC')"
+
 Version 1.1.4
 ------------------------------------------------------------------------
 * EPIC now handle cases of duplicate gene names in the input bulk or reference

diff --git a/vignettes/info.Rmd → vignettes/EPIC.Rmd b/vignettes/info.Rmd → vignettes/EPIC.Rmd