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Computer Science, Morphogenesis and Variability ‼️Open positions‼️

👋 Hello and welcome to the GitHub of the Guignard Lab or the Computer Science, Morphogenesis and Variability group 👋

We are theoreticians from many different backgrounds (🧑‍🔬biology, 🧑‍💻computer science, physics or mathematics). We work at trying to 🕵️better our understanding of embryo formation. We develop novel methods to quantify the development at the single cell scale using recordings from 🔬fluorescence microscopy🔬 and 🧬spatial omics🧬 and many different model and non-model organisms: 🐭mouse, 🦐Parhyale or gastruloids for example.

We mainly code in 🐍 Python 🐍 but are open to any open source language.

You can find more information about our research on our webpage or on the group page of the IBDM website

Current team members:

Former team members:

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  1. CenTuri-Course CenTuri-Course Public

    Python Course

    Jupyter Notebook 2 5

  2. sc3D sc3D Public

    Spatial Single Cell transcriptomic library

    Jupyter Notebook 17

  3. napari-sc3D-viewer napari-sc3D-viewer Public

    A plugin to visualise 3D spatial single cell omics

    Python 21 2

  4. registration-tools registration-tools Public

    Python 3 1

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