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davecash75 committed Jun 23, 2024
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3 changes: 1 addition & 2 deletions episodes/imaging-data-structure-and-formats.Rmd
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Expand Up @@ -471,8 +471,7 @@ The overlay list allows you to do the following:
* Identify the currently selected overlay (highlighted in blue).
* Add/remove overlays with the + and - buttons.
* Change the overlay display order with the ▲ and ▼ buttons.
* Show/hide each overlay with the eye button ( ![](fig/eye_icon.png)
{alt="eye icon" height='24px'} ), or by double clicking on the overlay name.
* Show/hide each overlay with the eye button ( ![](fig/eye_icon.png){alt="eye icon" height='24px'} ), or by double clicking on the overlay name.
* Link overlay display properties with the chainlink button
( ![](fig/chainlink_icon.png){alt="chain icon" height='24px'} ).
* Save an overlay if it has been edited, with the floppy disk button
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2 changes: 1 addition & 1 deletion episodes/structural-mri.Rmd
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Expand Up @@ -302,7 +302,7 @@ standard atlases and templates so that you can quickly access them.
![Add Standard image](fig/aic_smri_fsleyes_addstd.png){alt="Add standard function"}

Select the `MNI152_T1_1mm_brain` from this list of files.
![Choose MNI image](fig/aic_smri_fsleyes_choosemni.png)
![](fig/aic_smri_fsleyes_choosemni.png {alt="Choose MNI image"})

We can now check if our image is registered by flicking back and forth between
the MNI image and our image.
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8 changes: 4 additions & 4 deletions learners/setup.md
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Expand Up @@ -10,13 +10,13 @@ This page will tell you how to access your personal virtual (VM) to run these le
If you have completed the pre-survey questionnaire, then you should have received two emails. These may be located in your spam email:
1. One should be from the email address [email protected] with the title _Start accessing your apps using Amazon AppStream 2.0_. This will have the link to set your password and log in for the first time.
1. A second email should come from the same email with the title _Amazon AppStream 2.0: New apps available_.
![Appstream Email](fig/aic_appstream_email.png)
![](fig/aic_appstream_email.png{alt="Appstream Email"})
1. Click on the login link, and you should see the following page.
![Appstream Login](fig/aic_appstream_login.png)
![](fig/aic_appstream_login.png{alt="Appstream Login"})
1. Click on the **Desktop** item. It will then launch a computer and you will be able to see the Desktop on the screen
![Appstream Choose Desktop](fig/aic_appstream_choose_desktop.png)
![](fig/aic_appstream_choose_desktop.png{alt="Appstream Choose Desktop"})
1. You will see a status message that it is starting your machine. After that you should see a desktop of the computer you will be doing the lesson with.
![Appstream Desktop](fig/aic_smri_desktop.png)
![](fig/aic_smri_desktop.png{alt="Appstream Desktop"})
1. **IF you get an error message** saying "Resources not available, please wait a few minutes, as there will be more virtual machines spinning up to match the demand.

**If you did not supply an email yet, please approach an instructor and we will setup your account**
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