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add test for check_stan_model #461

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add test for check_stan_model #461

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cc6cd7a
add test for check_stan_model
fang19911030 May 16, 2023
7c1ae0e
Merge branch 'dev' into dev_pfang_test
eclee25 May 19, 2023
4df1f9f
Merge branch 'dev' into dev_pfang_test
eclee25 Jun 15, 2023
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19 changes: 17 additions & 2 deletions packages/taxdat/tests/testthat/test_setup_helpers.R
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Original file line number Diff line number Diff line change
Expand Up @@ -724,8 +724,6 @@ test_that("check_stan_iter_sampling works",{

})

## check_snap_tol, check_use_pop_weight, check_sfrac_thresh, check_ingest_covariates, check_ingest_new_covariates, check_stan_debug, check_stan_model, get_all_config_options, check_update_config

test_that("get_all_config_options works",{
config_options <- get_all_config_options()

Expand Down Expand Up @@ -901,4 +899,21 @@ test_that("check_stan_debug works", {
expect_error(check_stan_debug(debug = config_error$debug),
"Debug needs to be logical")
})

test_that("check_stan_model works", {
exist <- paste0("/home/usr/cholera_mapping_pipeline/Analysis/Stan/",
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We no longer have a Stan file of this name in the dev repo
Better to use this file name Analysis/Stan/mapping_model_inference.stan

"mapping_model_inference_normal_nocensprior_fixedadm0_mix_sigmainf.stan")
mock_file_exists <- function(file) {
if (file == exist) {
return(TRUE)
} else {
return(FALSE)
}
}
stan_dir <- "/home/usr/cholera_mapping_pipeline/Analysis/Stan/"
testthat::with_mock(file.exists = mock_file_exists, {
expect_equal(check_stan_model(exist, stan_dir), exist)
expect_error(check_stan_model("not_exist", "stan_dir"))
})
})
##check_stan_model, check_update_config