test examples for generic table parsing

INCATools · Apr 24, 2024 · a1409a9 · a1409a9
1 parent 33ada98
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Showing 5 changed files with 12 additions and 1 deletion.
diff --git a/tests/generic-test.tsv b/tests/generic-test.tsv
@@ -0,0 +1 @@
+s	slabel	user_slabel	o	olabel	user_olabel
diff --git a/tests/test-generic.png b/tests/test-generic.png
diff --git a/tests/test-generic.tsv b/tests/test-generic.tsv
@@ -0,0 +1,4 @@
+Organ_Level_1 ID	Organ_Level_1	Anatomical_Level_2 ID	Anatomical_Level_2	Anatomical_Level_3 ID	Anatomical_Level_3	Anatomical_Level_4 ID	Anatomical_Level_4
+UBERON:0000955	Brain	UBERON:0001890	Forebrain	UBERON:0001894	Diencephalon	UBERON:0001900	Prethalamus
+UBERON:0000955	Brain	UBERON:0001890	Forebrain	UBERON:0001894	Diencephalon	UBERON:0001898	Hypothalamus
+UBERON:0000955	Brain	UBERON:0001890	Forebrain	UBERON:0001894	Diencephalon	UBERON:0001900	Subthalamus
diff --git a/tests/test-generic_parsed.tsv b/tests/test-generic_parsed.tsv
@@ -0,0 +1,5 @@
+s	slabel	user_slabel	o	olabel	user_olabel
+UBERON:0001890		Forebrain	UBERON:0000955		Brain
+UBERON:0001894		Diencephalon	UBERON:0001890		Forebrain
+UBERON:0001900		Subthalamus	UBERON:0001894		Diencephalon
+UBERON:0001898		Hypothalamus	UBERON:0001894		Diencephalon
diff --git a/tests/test-parser.yaml b/tests/test-parser.yaml
@@ -4,4 +4,5 @@ relationships:
   has_part: BFO:0000051
   # has_soma_location: RO:0002100
 
-filename: tests/placenta.csv
+filename: tests/test-generic.tsv
+to_be_parsed: true