reorganize CI, add linux-codipack build+test #60
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| name: Ubuntu Basic CI | |
| on: | |
| push: | |
| branches: [ "main" ] | |
| pull_request: | |
| branches: [ "main" ] | |
| env: | |
| ISSM_DIR: ${{ github.workspace }} | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| ad_type: ['', 'codipack'] | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server hosted by GitHub!" | |
| - run: echo "The name of your branch is ${{ github.ref }} and your repository is ${{ github.repository }}." | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Cache externalpackages | |
| uses: actions/cache@v3 | |
| id: cache-externalpackages | |
| env: | |
| cache-name: cache-triangle-m1qn3-petsc | |
| with: | |
| path: ${{ env.ISSM_DIR }}/externalpackages/ | |
| key: ${{ runner.os }}-build-${{ env.cache-name }}-${{ hashFiles('**/package-lock.json') }} | |
| - name: Install External packages | |
| if: steps.cache-externalpackages.outputs.cache-hit != 'true' | |
| run: | | |
| cd $ISSM_DIR/externalpackages/triangle && ./install-linux.sh | |
| cd $ISSM_DIR/externalpackages/m1qn3 && ./install-linux.sh | |
| cd $ISSM_DIR/externalpackages/petsc && ./install-3.21-linux.sh | |
| - name: Install Codipack | |
| if: ${{ matrix.ad_type == 'codipack'}} | |
| run: | | |
| source $ISSM_DIR/etc/environment.sh | |
| cd $ISSM_DIR/externalpackages/gsl && ./install.sh | |
| cd $ISSM_DIR/externalpackages/codipack && ./install.sh | |
| cd $ISSM_DIR/externalpackages/medipack && ./install.sh | |
| - name: Get MATLAB | |
| id: setup-matlab | |
| uses: matlab-actions/setup-matlab@v2 | |
| with: | |
| release: R2023b | |
| cache: true | |
| - name: Reconfigure ISSM without AD | |
| if: ${{ matrix.ad_type == ''}} | |
| run: | | |
| source $ISSM_DIR/etc/environment.sh | |
| autoreconf -ivf | |
| ./configure --prefix=${ISSM_DIR} \ | |
| --disable-static \ | |
| --enable-development \ | |
| --enable-debugging \ | |
| --with-numthreads=4 \ | |
| --with-matlab-dir=${{ steps.setup-matlab.outputs.matlabroot }} \ | |
| --with-fortran-lib="-L/usr/lib/x86_64-linux-gnu -lgfortran" \ | |
| --with-mpi-include="${ISSM_DIR}/externalpackages/petsc/install/include" \ | |
| --with-mpi-libflags="-L${ISSM_DIR}/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort" \ | |
| --with-petsc-dir="${ISSM_DIR}/externalpackages/petsc/install" \ | |
| --with-blas-lapack-dir="${ISSM_DIR}/externalpackages/petsc/install" \ | |
| --with-metis-dir="${ISSM_DIR}/externalpackages/petsc/install" \ | |
| --with-parmetis-dir="${ISSM_DIR}/externalpackages/petsc/install" \ | |
| --with-scalapack-dir="${ISSM_DIR}/externalpackages/petsc/install" \ | |
| --with-mumps-dir="${ISSM_DIR}/externalpackages/petsc/install" \ | |
| --with-triangle-dir="${ISSM_DIR}/externalpackages/triangle/install" \ | |
| --with-m1qn3-dir="${ISSM_DIR}/externalpackages/m1qn3/install" | |
| - name: Reconfigure ISSM without Codipack | |
| if: ${{ matrix.ad_type == 'codipack'}} | |
| run: | | |
| source $ISSM_DIR/etc/environment.sh | |
| autoreconf -ivf | |
| ./configure --prefix=${ISSM_DIR} \ | |
| --enable-tape-alloc \ | |
| --enable-development \ | |
| --enable-debugging \ | |
| --with-numthreads=4 \ | |
| --without-kriging \ | |
| --without-kml \ | |
| --without-Sealevelchange \ | |
| --without-Love \ | |
| --with-matlab-dir=${{ steps.setup-matlab.outputs.matlabroot }} \ | |
| --with-fortran-lib="-L/usr/lib/x86_64-linux-gnu -lgfortran" \ | |
| --with-mpi-include="${ISSM_DIR}/externalpackages/petsc/install/include" \ | |
| --with-mpi-libflags="-L${ISSM_DIR}/externalpackages/petsc/install/lib -lmpi -lmpicxx -lmpifort" \ | |
| --with-petsc-dir="${ISSM_DIR}/externalpackages/petsc/install" \ | |
| --with-blas-lapack-dir="${ISSM_DIR}/externalpackages/petsc/install" \ | |
| --with-metis-dir="${ISSM_DIR}/externalpackages/petsc/install" \ | |
| --with-parmetis-dir="${ISSM_DIR}/externalpackages/petsc/install" \ | |
| --with-scalapack-dir="${ISSM_DIR}/externalpackages/petsc/install" \ | |
| --with-mumps-dir="${ISSM_DIR}/externalpackages/petsc/install" \ | |
| --with-triangle-dir="${ISSM_DIR}/externalpackages/triangle/install" \ | |
| --with-m1qn3-dir="${ISSM_DIR}/externalpackages/m1qn3/install" \ | |
| --with-gsl-dir=${ISSM_DIR}/externalpackages/gsl/install \ | |
| --with-medipack-dir="${ISSM_DIR}/externalpackages/medipack/install" \ | |
| --with-codipack-dir="${ISSM_DIR}/externalpackages/codipack/install" | |
| - name: Compile ISSM | |
| run: make -j16 install | |
| - name: Compress ISSM artifact | |
| run: tar -cvf ISSM_artifact-${{ matrix.ad_type}}.tar -C ${{ env.ISSM_DIR }}/ . | |
| - name: Upload ISSM artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: ISSM-${{ runner.os }}-${{ matrix.ad_type}} | |
| path: ISSM_artifact-${{ matrix.ad_type}}.tar | |
| compression-level: 1 | |
| test: | |
| runs-on: ubuntu-latest | |
| needs: build | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| ad_type: ['', 'codipack'] | |
| test-cases: ['101:110, "201:210', '301:310'] | |
| include: | |
| - ad_type: 'codipack' | |
| test-cases: '3015,3119,3480,3201:3206' | |
| steps: | |
| - name: Download ISSM artifact | |
| uses: actions/download-artifact@v4 | |
| with: | |
| name: ISSM-${{ runner.os }}-${{ matrix.ad_type}} | |
| path: ${{ env.ISSM_DIR }} | |
| - name: uncompress ISSM artifact | |
| run: | | |
| tar -xvf ISSM_artifact-${{ matrix.ad_type}}.tar | |
| source $ISSM_DIR/etc/environment.sh | |
| working-directory: ${{ env.ISSM_DIR }} | |
| shell: 'bash' | |
| - name: Get MATLAB | |
| id: setup-matlab | |
| uses: matlab-actions/setup-matlab@v2 | |
| with: | |
| release: R2023b | |
| cache: true | |
| - name: Creating matlab_ci.m | |
| run: | | |
| cat > ${ISSM_DIR}/matlab_ci.m << EOF | |
| % Go to the test directory | |
| cd $ISSM_DIR/test/NightlyRun/ | |
| % Add ISSM tools to path | |
| addpath('${ISSM_DIR}/src/m/dev'); | |
| devpath; | |
| % Run tests | |
| runme('exclude',[IdFromString('Dakota')],'id',[${{matrix.test-cases}}],'quitonerror',1); | |
| quit(0); | |
| EOF | |
| cat ${ISSM_DIR}/matlab_ci.m | |
| - name: Get run-matlab-command | |
| run: | | |
| wget -O /usr/local/bin/run-matlab-command https://ssd.mathworks.com/supportfiles/ci/run-matlab-command/v2/glnxa64/run-matlab-command | |
| chmod +x /usr/local/bin/run-matlab-command | |
| - name: Run MATLAB tests | |
| run: | | |
| source $ISSM_DIR/etc/environment.sh | |
| LD_PRELOAD=/lib/x86_64-linux-gnu/libstdc++.so.6:$ISSM_DIR/externalpackages/petsc/install/lib/libmpi.so:$ISSM_DIR/externalpackages/petsc/install/lib/libmpifort.so run-matlab-command "matlab_ci" | |
| - run: echo "This job's status is ${{ job.status }}." |