CHG: do not preload petsc files if petsc is not installed #42
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| name: Compilation CI | |
| on: | |
| push: | |
| branches: [ "main" ] | |
| pull_request: | |
| branches: [ "main" ] | |
| env: | |
| ISSM_DIR: ${{ github.workspace }} | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server hosted by GitHub!" | |
| - run: echo "The name of your branch is ${{ github.ref }} and your repository is ${{ github.repository }}." | |
| - name: Installing MATLAB | |
| id: setup-matlab | |
| uses: matlab-actions/setup-matlab@v2 | |
| with: | |
| release: R2023b | |
| - name: Install Open MPI | |
| run: | | |
| sudo apt-get install -y libopenmpi-dev | |
| echo "Here is what's in include" | |
| ls /usr/lib/x86_64-linux-gnu/openmpi/include/ | |
| echo "Here is mpicc -show" | |
| mpicc -show | |
| - name: Install METIS | |
| run: sudo apt-get install -y libmetis-dev | |
| - name: Install PETSc | |
| run: sudo apt-get install -y petsc-dev | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Install and Compile ISSM | |
| env: | |
| MATLAB_PATH: ${{ steps.setup-matlab.outputs.matlabroot }} | |
| run: | | |
| cd .github/ci_scripts | |
| ./ci_ISSM.sh github_linux_basic | |
| - name: Get run-matlab-command | |
| run: | | |
| wget -O /usr/local/bin/run-matlab-command https://ssd.mathworks.com/supportfiles/ci/run-matlab-command/v2/glnxa64/run-matlab-command | |
| chmod +x /usr/local/bin/run-matlab-command | |
| - name: Run MATLAB Command | |
| run: | | |
| source $ISSM_DIR/etc/environment.sh | |
| LD_PRELOAD=/lib/x86_64-linux-gnu/libstdc++.so.6 run-matlab-command "matlab_ci" | |
| #LD_PRELOAD=/lib/x86_64-linux-gnu/libstdc++.so.6:$ISSM_DIR/externalpackages/petsc/install/lib/libmpi.so:$ISSM_DIR/externalpackages/petsc/install/lib/libmpifort.so run-matlab-command "matlab_ci" | |
| - run: echo "This job's status is ${{ job.status }}." |