CHG: removing MPICH from PETSc to speed up CI #46
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| name: Compilation CI | |
| on: | |
| push: | |
| branches: [ "main" ] | |
| pull_request: | |
| branches: [ "main" ] | |
| env: | |
| ISSM_DIR: ${{ github.workspace }} | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - run: echo "The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "This job is now running on a ${{ runner.os }} server hosted by GitHub!" | |
| - run: echo "The name of your branch is ${{ github.ref }} and your repository is ${{ github.repository }}." | |
| - name: Installling Open MPI | |
| run: | | |
| sudo apt-get install -y libopenmpi-dev | |
| - name: Installing MATLAB | |
| id: setup-matlab | |
| uses: matlab-actions/setup-matlab@v2 | |
| with: | |
| release: R2023b | |
| - name: Check out repository code | |
| uses: actions/checkout@v4 | |
| - name: Modify PETSc's installation script | |
| run: | | |
| echo "Removing mpich from PETSc installation script" | |
| sed -i.bak '/mpich/d' $ISSM_DIR/externalpackages/petsc/install-3.21-linux.sh | |
| - name: Install External packages | |
| run: | | |
| cd $ISSM_DIR/externalpackages/triangle && ./install-linux.sh | |
| cd $ISSM_DIR/externalpackages/m1qn3 && ./install-linux.sh | |
| cd $ISSM_DIR/externalpackages/petsc && ./install-3.21-linux.sh | |
| source $ISSM_DIR/etc/environment.sh | |
| - name: Reconfigure ISSM | |
| run: | | |
| autoreconf -ivf | |
| ./configure --prefix=${ISSM_DIR} \ | |
| --disable-static \ | |
| --enable-development \ | |
| --enable-debugging \ | |
| --with-numthreads=4 \ | |
| --with-matlab-dir=${{ steps.setup-matlab.outputs.matlabroot }} \ | |
| --with-fortran-lib="-L/usr/lib/x86_64-linux-gnu -lgfortran" \ | |
| --with-mpi-include="/usr/lib/x86_64-linux-gnu/openmpi/include/" \ | |
| --with-mpi-libflags="-L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi -lmpi_cxx" \ | |
| --with-petsc-dir="${ISSM_DIR}/externalpackages/petsc/install" \ | |
| --with-blas-lapack-dir="${ISSM_DIR}/externalpackages/petsc/install" \ | |
| --with-metis-dir="${ISSM_DIR}/externalpackages/petsc/install" \ | |
| --with-parmetis-dir="${ISSM_DIR}/externalpackages/petsc/install" \ | |
| --with-scalapack-dir="${ISSM_DIR}/externalpackages/petsc/install" \ | |
| --with-mumps-dir="${ISSM_DIR}/externalpackages/petsc/install" \ | |
| --with-triangle-dir="${ISSM_DIR}/externalpackages/triangle/install" \ | |
| --with-m1qn3-dir="${ISSM_DIR}/externalpackages/m1qn3/install" | |
| - name: Compile ISSM | |
| run: make -j8 install | |
| - name: Prepare MATLAB script | |
| run: | | |
| cat > ${ISSM_DIR}/matlab_ci.m << EOF | |
| % Go to the test directory | |
| cd $ISSM_DIR/test/NightlyRun/ | |
| % Add ISSM tools to path | |
| addpath('${ISSM_DIR}/src/m/dev'); | |
| devpath; | |
| % Run tests | |
| runme('exclude',[IdFromString('Dakota')],'id',101:110,'quitonerror',1); | |
| quit(0); | |
| EOF | |
| cat ${ISSM_DIR}/matlab_ci.m | |
| - name: Get run-matlab-command | |
| run: | | |
| wget -O /usr/local/bin/run-matlab-command https://ssd.mathworks.com/supportfiles/ci/run-matlab-command/v2/glnxa64/run-matlab-command | |
| chmod +x /usr/local/bin/run-matlab-command | |
| - name: Run MATLAB Command | |
| run: | | |
| source $ISSM_DIR/etc/environment.sh | |
| LD_PRELOAD=/lib/x86_64-linux-gnu/libstdc++.so.6:$ISSM_DIR/externalpackages/petsc/install/lib/libmpi.so:$ISSM_DIR/externalpackages/petsc/install/lib/libmpifort.so run-matlab-command "matlab_ci" | |
| - run: echo "This job's status is ${{ job.status }}." |