Tags: Inria-Empenn/nipype
Tags
0.13.1 (May 20, 2017) ===================== * FIX: Make release compatible with conda-forge build process (nipy#2017) * ENH: Update some minimum versions in compliance with Debian Jessie (nipy#2017) * ENH: Circle builds use cached docker layers (nipy#2017) * ENH: Base docker to use FS6 and ANTS 2.2.0 (nipy#2024) * FIX: Mailmap and contributor acknowledgment (nipy#2017) * FIX: Preserve node properties in sub nodes of MapNode (nipy#2019) * FIX: Fix interfaces 3DUnifize, ICA_AROMA, BinaryMaths, RegAverage, BBRegister, AffineInitializer (nipy#2025, nipy#2027, nipy#2036, nipy#2037, nipy#2031, nipy#2010) * ENH: Add Anisotropic Power interface (nipy#2039) * FIX: Bayesian estimation in SPM (nipy#2030) 0.13.0 (May 11, 2017) ===================== * ENH: Multi-stage recon-all directives (nipy#1991) * FIX: FEAT "folder does not exist" error (nipy#2000) * ENH: Niftyfit interfaces (nipy#1910) * FIX: Define ANTSPATH for BrainExtraction automatically (nipy#1986) * ENH: New trait for imaging files (nipy#1949) * ENH: Niftyseg interfaces (nipy#1911) * ENH: Niftyreg interfaces (nipy#1913) * MRG: Allow more support for CLI (nipy#1908) * ENH: 3dQwarpPlusMinus interface (nipy#1974) * FIX: PY3.6 support (nipy#1977) * FIX: PY3 and stream fixes for MRTrix2TrackVis (nipy#1804) * ENH: More mask options for CompCor interfaces (nipy#1968 + nipy#1992) * ENH: Additional TOPUP outputs (nipy#1976) * ENH: Additional Eddy flags (nipy#1967) * ENH: ReconAll handlers for less common cases (nipy#1966) * ENH: FreeSurferSource now finds graymid/midthickness surfs (nipy#1972) * ENH: Additional fslmaths dimensional reduction operations (nipy#1956) * ENH: More options for RobustFOV interface (nipy#1923) * ENH: Add MRIsCombine to FreeSurfer utils (nipy#1948) * FIX: Level1Design EV parameter substitution (nipy#1953) * FIX: Dcm2niix outputs can be uncompressed (nipy#1951) * FIX: Ensure build fails in Circle when tests fail (nipy#1981) * ENH: Add interface to antsAffineInitializer (nipy#1980) * ENH: AFNI motion parameter support for FrameWiseDisplacement (nipy#1840) * ENH: Add ANTs KellyKapowski interface (nipy#1845) * FIX: AFNI interface bug setting OMP_NUM_THREADS to 1 (nipy#1728) * FIX: Select Eddy run command at runtime (nipy#1871) * FIX: Increase FLIRT's flexibility with apply_xfm (nipy#1875) * DOC: Update FSL preprocess docstrings (nipy#1881) * ENH: Support GIFTI outputs in SampleToSurface (nipy#1886) * FIX: Configparser differences between PY2 and PY3 (nipy#1890) * ENH: Add mris_expand interface (nipy#1893) * FIX: Split over-eager globs in FreeSurferSource (nipy#1894) * FIX: Store undefined by default so that xor checks don't trip (nipy#1903) * FIX: Gantt chart generator PY3 compatibility (nipy#1907) * FIX: Add DOF and --fsl-dof options to BBRegister (nipy#1917) * ENH: Auto-derive input_names in Function (nipy#1918) * FIX: Minor fixes for NonSteadyStateDetector (nipy#1926) * DOC: Add duecredit references for AFNI and FSL (nipy#1930) * ENH: Added zenodo (https://zenodo.org/) file (nipy#1924) * ENH: Disable symlinks on CIFS filesystems (nipy#1941) * ENH: Sphinx extension to plot workflows (nipy#1896) * ENH: Added non-steady state detector for EPI data (nipy#1839) * ENH: Enable new BBRegister init options for FSv6+ (nipy#1811) * REF: Splits nipype.interfaces.utility into base, csv, and wrappers (nipy#1828) * FIX: Makespec now runs with nipype in current directory (nipy#1813) * FIX: Flexible nifti opening with mmap if Numpy < 1.12.0 (nipy#1796 + nipy#1831) * ENH: DVARS includes intensity normalization feature - turned on by default (nipy#1827) * FIX: DVARS is correctly using sum of squares instead of standard deviation (nipy#1827) * ENH: Refactoring of nipype.interfaces.utility (nipy#1828) * FIX: CircleCI were failing silently. Some fixes to tests (nipy#1833) * FIX: Issues in Docker image permissions, and docker documentation (nipy#1825) * ENH: Revised all Dockerfiles and automated deployment to Docker Hub from CircleCI (nipy#1815) * ENH: Update ReconAll interface for FreeSurfer v6.0.0 (nipy#1790) * FIX: Cast DVARS float outputs to avoid memmap error (nipy#1777) * FIX: FSL FNIRT intensity mapping files (nipy#1799) * ENH: Additional outputs generated by FSL EDDY (nipy#1793) * TST: Parallelize CircleCI build across 4 containers (nipy#1769) 0.13.0-rc1 (January 4, 2017) ============================ * FIX: Compatibility with traits 4.6 (nipy#1770) * FIX: Multiproc deadlock (nipy#1756) * TST: Replace nose and unittest with pytest (nipy#1722, nipy#1751) * FIX: Semaphore capture using MultiProc plugin (nipy#1689) * REF: Refactor AFNI interfaces (nipy#1678, nipy#1680) * ENH: Move nipype commands to group command using click (nipy#1608) * FIX: AFNI Retroicor interface fixes (nipy#1669) * FIX: Minor errors after migration to setuptools (nipy#1671) * ENH: Add AFNI 3dNote interface (nipy#1637) * ENH: Abandon distutils, only use setuptools (nipy#1627) * FIX: Minor bugfixes related to unicode literals (nipy#1656) * TST: Automatic retries in travis (https://github.com/nipy/nipype/pull/1659/files) * ENH: Add signal extraction interface (nipy#1647) * ENH: Add a DVARS calculation interface (nipy#1606) * ENH: New interface to b0calc of FSL-POSSUM (nipy#1399) * ENH: Add CompCor (nipy#1599) * ENH: Add duecredit entries (nipy#1466) * FIX: Python 3 compatibility fixes (nipy#1572) * REF: Improved PEP8 compliance for fsl interfaces (nipy#1597) * REF: Improved PEP8 compliance for spm interfaces (nipy#1593) * TST: Replaced coveralls with codecov (nipy#1609) * ENH: More BrainSuite interfaces (nipy#1554) * ENH: Convenient load/save of interface inputs (nipy#1591) * ENH: Add a Framewise Displacement calculation interface (nipy#1604) * FIX: Use builtins open and unicode literals for py3 compatibility (nipy#1572) * TST: reduce the size of docker images & use tags for images (nipy#1564) * ENH: Implement missing inputs/outputs in FSL AvScale (nipy#1563) * FIX: Fix symlink test in copyfile (nipy#1570, nipy#1586) * ENH: Added support for custom job submission check in SLURM (nipy#1582) * ENH: Added ANTs interface CreateJacobianDeterminantImage; replaces deprecated JacobianDeterminant (nipy#1654)
Release 0.13.0 (May 11, 2017) ============================= * ENH: Multi-stage recon-all directives (nipy#1991) * FIX: FEAT "folder does not exist" error (nipy#2000) * ENH: Niftyfit interfaces (nipy#1910) * FIX: Define ANTSPATH for BrainExtraction automatically (nipy#1986) * ENH: New trait for imaging files (nipy#1949) * ENH: Niftyseg interfaces (nipy#1911) * ENH: Niftyreg interfaces (nipy#1913) * MRG: Allow more support for CLI (nipy#1908) * ENH: 3dQwarpPlusMinus interface (nipy#1974) * FIX: PY3.6 support (nipy#1977) * FIX: PY3 and stream fixes for MRTrix2TrackVis (nipy#1804) * ENH: More mask options for CompCor interfaces (nipy#1968 + nipy#1992) * ENH: Additional TOPUP outputs (nipy#1976) * ENH: Additional Eddy flags (nipy#1967) * ENH: ReconAll handlers for less common cases (nipy#1966) * ENH: FreeSurferSource now finds graymid/midthickness surfs (nipy#1972) * ENH: Additional fslmaths dimensional reduction operations (nipy#1956) * ENH: More options for RobustFOV interface (nipy#1923) * ENH: Add MRIsCombine to FreeSurfer utils (nipy#1948) * FIX: Level1Design EV parameter substitution (nipy#1953) * FIX: Dcm2niix outputs can be uncompressed (nipy#1951) * FIX: Ensure build fails in Circle when tests fail (nipy#1981) * ENH: Add interface to antsAffineInitializer (nipy#1980) * ENH: AFNI motion parameter support for FrameWiseDisplacement (nipy#1840) * ENH: Add ANTs KellyKapowski interface (nipy#1845) * FIX: AFNI interface bug setting OMP_NUM_THREADS to 1 (nipy#1728) * FIX: Select Eddy run command at runtime (nipy#1871) * FIX: Increase FLIRT's flexibility with apply_xfm (nipy#1875) * DOC: Update FSL preprocess docstrings (nipy#1881) * ENH: Support GIFTI outputs in SampleToSurface (nipy#1886) * FIX: Configparser differences between PY2 and PY3 (nipy#1890) * ENH: Add mris_expand interface (nipy#1893) * FIX: Split over-eager globs in FreeSurferSource (nipy#1894) * FIX: Store undefined by default so that xor checks don't trip (nipy#1903) * FIX: Gantt chart generator PY3 compatibility (nipy#1907) * FIX: Add DOF and --fsl-dof options to BBRegister (nipy#1917) * ENH: Auto-derive input_names in Function (nipy#1918) * FIX: Minor fixes for NonSteadyStateDetector (nipy#1926) * DOC: Add duecredit references for AFNI and FSL (nipy#1930) * ENH: Added zenodo (https://zenodo.org/) file (nipy#1924) * ENH: Disable symlinks on CIFS filesystems (nipy#1941) * ENH: Sphinx extension to plot workflows (nipy#1896) * ENH: Added non-steady state detector for EPI data (nipy#1839) * ENH: Enable new BBRegister init options for FSv6+ (nipy#1811) * REF: Splits nipype.interfaces.utility into base, csv, and wrappers (nipy#1828) * FIX: Makespec now runs with nipype in current directory (nipy#1813) * FIX: Flexible nifti opening with mmap if Numpy < 1.12.0 (nipy#1796 + nipy#1831) * ENH: DVARS includes intensity normalization feature - turned on by default (nipy#1827) * FIX: DVARS is correctly using sum of squares instead of standard deviation (nipy#1827) * ENH: Refactoring of nipype.interfaces.utility (nipy#1828) * FIX: CircleCI were failing silently. Some fixes to tests (nipy#1833) * FIX: Issues in Docker image permissions, and docker documentation (nipy#1825) * ENH: Revised all Dockerfiles and automated deployment to Docker Hub from CircleCI (nipy#1815) * ENH: Update ReconAll interface for FreeSurfer v6.0.0 (nipy#1790) * FIX: Cast DVARS float outputs to avoid memmap error (nipy#1777) * FIX: FSL FNIRT intensity mapping files (nipy#1799) * ENH: Additional outputs generated by FSL EDDY (nipy#1793) * TST: Parallelize CircleCI build across 4 containers (nipy#1769) * FIX: Compatibility with traits 4.6 (nipy#1770) * FIX: Multiproc deadlock (nipy#1756) * TST: Replace nose and unittest with pytest (nipy#1722, nipy#1751) * FIX: Semaphore capture using MultiProc plugin (nipy#1689) * REF: Refactor AFNI interfaces (nipy#1678, nipy#1680) * ENH: Move nipype commands to group command using click (nipy#1608) * FIX: AFNI Retroicor interface fixes (nipy#1669) * FIX: Minor errors after migration to setuptools (nipy#1671) * ENH: Add AFNI 3dNote interface (nipy#1637) * ENH: Abandon distutils, only use setuptools (nipy#1627) * FIX: Minor bugfixes related to unicode literals (nipy#1656) * TST: Automatic retries in travis (https://github.com/nipy/nipype/pull/1659/files) * ENH: Add signal extraction interface (nipy#1647) * ENH: Add a DVARS calculation interface (nipy#1606) * ENH: New interface to b0calc of FSL-POSSUM (nipy#1399) * ENH: Add CompCor (nipy#1599) * ENH: Add duecredit entries (nipy#1466) * FIX: Python 3 compatibility fixes (nipy#1572) * REF: Improved PEP8 compliance for fsl interfaces (nipy#1597) * REF: Improved PEP8 compliance for spm interfaces (nipy#1593) * TST: Replaced coveralls with codecov (nipy#1609) * ENH: More BrainSuite interfaces (nipy#1554) * ENH: Convenient load/save of interface inputs (nipy#1591) * ENH: Add a Framewise Displacement calculation interface (nipy#1604) * FIX: Use builtins open and unicode literals for py3 compatibility (nipy#1572) * TST: reduce the size of docker images & use tags for images (nipy#1564) * ENH: Implement missing inputs/outputs in FSL AvScale (nipy#1563) * FIX: Fix symlink test in copyfile (nipy#1570, nipy#1586) * ENH: Added support for custom job submission check in SLURM (nipy#1582) * ENH: Added ANTs interface CreateJacobianDeterminantImage; replaces deprecated JacobianDeterminant (nipy#1654)
Merge pull request nipy#1772 from satra/rel/0.13.0-rc1 Rel/0.13.0 rc1
Merge pull request nipy#1519 from satra/rel/0.12.0-rc2 updates for 0.12.0-rc2
Merge pull request nipy#1449 from satra/rel/0.12rc1 final changes before tagging release candidate
PreviousNext