--- re-building ‘gsea.Rmd’ using rmarkdown

processing vignette 'gsea.Rmd' failed with diagnostics:

tangling vignette 'gsea.Rmd' failed with diagnostics:

processing vignette 'permpvals.Rmd' failed with diagnostics:

tangling vignette 'permpvals.Rmd' failed with diagnostics:

processing vignette 'simulation.Rmd' failed with diagnostics:

tangling vignette 'simulation.Rmd' failed with diagnostics:

Vignette re-building failed.

Build process failed

Process completed with exit code 1.

Failed to get R 4.4.1: Failed to get R 4.4.1: Failed to download version 4.4.1: Error: Unexpected HTTP response: 404

--- re-building 'gsea.Rmd' using rmarkdown

processing vignette 'gsea.Rmd' failed with diagnostics:

tangling vignette 'gsea.Rmd' failed with diagnostics:

processing vignette 'permpvals.Rmd' failed with diagnostics:

tangling vignette 'permpvals.Rmd' failed with diagnostics:

processing vignette 'simulation.Rmd' failed with diagnostics:

tangling vignette 'simulation.Rmd' failed with diagnostics:

Vignette re-building failed.

Build process failed

Process completed with exit code 1.

there is no package called ‘rcmdcheck’

Process completed with exit code 1.

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, r-lib/actions/setup-r@v1, r-lib/actions/setup-pandoc@v1, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2, r-lib/actions/setup-r@v1, r-lib/actions/setup-pandoc@v1, actions/cache@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

No files were found with the provided path: check. No artifacts will be uploaded.

r-lib/actions/setup-r@v1 is deprecated. Please update your workflow to use the 'v2' version. Also look at the examples at https://github.com/r-lib/actions/tree/v2/examples because '@v2' workflows are much simpler than 'v1' workflows.

The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/

r-lib/actions/setup-pandoc@v1 is deprecated. Please update your workflow to use the 'v2' version.

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, r-lib/actions/setup-r@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2, r-lib/actions/setup-r@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

r-lib/actions/setup-r@v1 is deprecated. Please update your workflow to use the 'v2' version. Also look at the examples at https://github.com/r-lib/actions/tree/v2/examples because '@v2' workflows are much simpler than 'v1' workflows.

pkg-config 0.29.2_3 is already installed and up-to-date. To reinstall 0.29.2_3, run: brew reinstall pkg-config

No files were found with the provided path: check. No artifacts will be uploaded.

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, r-lib/actions/setup-r@v1, r-lib/actions/setup-pandoc@v1. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2, r-lib/actions/setup-r@v1, r-lib/actions/setup-pandoc@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

r-lib/actions/setup-r@v1 is deprecated. Please update your workflow to use the 'v2' version. Also look at the examples at https://github.com/r-lib/actions/tree/v2/examples because '@v2' workflows are much simpler than 'v1' workflows.

The `set-output` command is deprecated and will be disabled soon. Please upgrade to using Environment Files. For more information see: https://github.blog/changelog/2022-10-11-github-actions-deprecating-save-state-and-set-output-commands/

No files were found with the provided path: check. No artifacts will be uploaded.

r-lib/actions/setup-pandoc@v1 is deprecated. Please update your workflow to use the 'v2' version.

The following actions uses node12 which is deprecated and will be forced to run on node16: actions/checkout@v2, r-lib/actions/setup-r@v1, r-lib/actions/setup-pandoc@v1, actions/cache@v2. For more info: https://github.blog/changelog/2023-06-13-github-actions-all-actions-will-run-on-node16-instead-of-node12-by-default/

The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v2, r-lib/actions/setup-r@v1, r-lib/actions/setup-pandoc@v1, actions/cache@v2. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

No files were found with the provided path: check. No artifacts will be uploaded.

r-lib/actions/setup-pandoc@v1 is deprecated. Please update your workflow to use the 'v2' version.

r-lib/actions/setup-r@v1 is deprecated. Please update your workflow to use the 'v2' version. Also look at the examples at https://github.com/r-lib/actions/tree/v2/examples because '@v2' workflows are much simpler than 'v1' workflows.