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@JaneliaSciComp

Howard Hughes Medical Institute

GitHub organization maintained by Scientific Computing Software at HHMI's Janelia Research Campus for use by HHMI staff and external collaborators.

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  1. bigstream bigstream Public

    Tools for distributed alignment of massive images

    Jupyter Notebook 79 21

  2. NIDAQ.jl NIDAQ.jl Public

    National Instruments Data Acquisition Interface

    Julia 47 16

  3. JRCLUST JRCLUST Public

    JRCLUST

    MATLAB 34 22

  4. multifish multifish Public

    EASI-FISH analysis pipeline for spatial transcriptomics

    Jupyter Notebook 33 13

  5. xarray-multiscale xarray-multiscale Public

    scalable multiscale image pyramids in python

    Python 26 3

  6. SharkViewer SharkViewer Public

    SharkViewer is a web-based viewer for SWC neuron files. It is written entirely in JavaScript using Three.js.

    JavaScript 24 11

Repositories

Showing 10 of 269 repositories
  • easifish Public
    JaneliaSciComp/easifish’s past year of commit activity
    Nextflow 0 BSD-3-Clause 0 0 1 Updated Jan 29, 2025
  • VVDViewer Public

    3D/4D volumetric rendering of microscopy data

    JaneliaSciComp/VVDViewer’s past year of commit activity
    C++ 21 BSD-3-Clause 5 3 1 Updated Jan 29, 2025
  • EM_recon_pipeline Public

    Pipeline scripts and tools for reconstructing Electron Microscopy volumes.

    JaneliaSciComp/EM_recon_pipeline’s past year of commit activity
    Python 3 BSD-3-Clause 3 0 4 Updated Jan 29, 2025
  • containers Public

    Containers for workflow plugins

    JaneliaSciComp/containers’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Jan 29, 2025
  • doi_common Public

    Library of common DOI-related functions for Python

    JaneliaSciComp/doi_common’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Jan 29, 2025
  • BigStitcher-Spark Public

    Running compute-intense parts of BigStitcher distributed

    JaneliaSciComp/BigStitcher-Spark’s past year of commit activity
    Java 21 BSD-2-Clause 12 15 1 Updated Jan 29, 2025
  • NIDAQ.jl Public

    National Instruments Data Acquisition Interface

    JaneliaSciComp/NIDAQ.jl’s past year of commit activity
    Julia 47 16 3 1 Updated Jan 29, 2025
  • JaneliaDataStandards Public

    A pilot experiment to dissminate information about Janelia's biomaging data formats.

    JaneliaSciComp/JaneliaDataStandards’s past year of commit activity
    HTML 11 BSD-3-Clause 3 3 3 Updated Jan 29, 2025
  • hortacloud-website Public

    Documentation website for HortaCloud

    JaneliaSciComp/hortacloud-website’s past year of commit activity
    HTML 2 BSD-3-Clause 0 0 3 Updated Jan 29, 2025
  • SongExplorer Public

    deep learning for acoustic signals

    JaneliaSciComp/SongExplorer’s past year of commit activity
    Python 24 BSD-3-Clause 6 5 1 Updated Jan 28, 2025
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