will work on this branch

reconstruction/alert/src/main/java/org/jlab/rec/atof/Cluster/AtofCluster.java

@@ -5,7 +5,7 @@
 
 /**
  *
- * @author npilleux
+ * @authors npilleux, churaman
  */
 
 
@@ -82,6 +82,7 @@ public void setPath_length(double path_length) {
 
     //Cluster coordinates and time are defined as the coordinates and time of the max energy hit
     //Can be changed later
+
     public final void computeClusterProperties() {
         this.energy=0;
         double max_energy = -1;

reconstruction/alert/src/main/java/org/jlab/rec/atof/Cluster/ClusterFinder.java

@@ -16,8 +16,9 @@
 
 /**
  *
- * @author npilleux
+ * @authors npilleux,churaman
  */
+
 public class ClusterFinder {
 
     private ArrayList<AtofCluster> clusters;
@@ -42,16 +43,10 @@ public void MakeClusters(HitFinder hitfinder) {
         double sigma_Phi = 6.0; //angle opening of a layer. to be read from DB in the future
         double sigma_Z = 6000;//to be read from DB in the future
         double sigma_T = 1000;//timing resolution to be read from DB in the future
-
-	/*
-        double sigma_Phi = loadParameterFromDB("SIGMA_PHI");
-        double sigma_Z = loadParameterFromDB("SIGMA_Z");
-        double sigma_T = loadParameterFromDB("SIGMA_T");
-	*/
-
 	int sigma_module = 1; //hits are always within +-1 phi module of the most energetic
         int sigma_component = 1;//hits are always within +-1 z component of the most energetic
 
+
         //Looping through wedge hits first
         for (int i_wedge = 0; i_wedge < wedge_hits.size(); i_wedge++) {
             AtofHit this_wedge_hit = wedge_hits.get(i_wedge);

reconstruction/alert/src/main/java/org/jlab/rec/atof/Hit/AtofHit.java

@@ -19,7 +19,7 @@
  * computed from atof detector object using the geometry service Stores whether
  * the hit is part of a cluster. Calculates time, energy based on TDC/ToT.
  *
- * @author npilleux
+ * @authors npilleux, churaman
  */
 public class AtofHit {
 
@@ -285,6 +285,7 @@ public final int slc_to_xyz(Detector atof) {
      * @param hit2match The AtofHit object to compare with the current instance.
      * @return {@code true} if the hits match; {@code false} otherwise.
      */
+
     public boolean matchBar(AtofHit hit2match) {
         if (this.getSector() != hit2match.getSector()) {
             return false; //System.out.print("Two hits in different sectors \n");
@@ -386,6 +387,7 @@ public AtofHit(int sector, int layer, int component, int order, int tdc, int tot
      * TrackProjections.
      *
      */
+
     public final void matchTrack(TrackProjector track_projector) {
         double sigma_phi = 0;
         double sigma_z = 0;

reconstruction/alert/src/main/java/org/jlab/rec/atof/Hit/BarHit.java

@@ -1,5 +1,4 @@
 package org.jlab.rec.atof.hit;
-
 import org.jlab.detector.calib.utils.DatabaseConstantProvider;
 import org.jlab.geom.base.Detector;
 import org.jlab.geom.detector.alert.ATOF.AlertTOFFactory;
@@ -15,8 +14,9 @@
  * by the two hits upstream and downstream composing a full bar hit. z position,
  * time and energy are defined from the up/down hits
  *
- * @author npilleux
+ * @authors npilleux,churaman 
  */
+
 public class BarHit extends AtofHit {
 
     //A bar hit is the combination of a downstream and upstream hits

reconstruction/alert/src/main/java/org/jlab/rec/atof/Hit/HitFinder.java

@@ -19,7 +19,7 @@
 
 /**
  *
- * @author npilleux
+ * @authors npilleux,churaman
  */
 public class HitFinder {
 

reconstruction/alert/src/main/java/org/jlab/rec/atof/TrackMatch/TrackProjector.java

@@ -180,10 +180,12 @@ public void projectMCTracks(DataEvent event) {//, CalibrationConstantsLoader ccd
                 double pz = bank.getFloat("pz", i);
 
                 //Put everything in MM
+
                 x = x*10;
                 y = y*10;
                 z = z*10;
-                Units units = Units.MM;   
+
+		Units units = Units.MM;   
 
                 int q = 1; //need the charge sign from tracking
 
@@ -194,15 +196,18 @@ public void projectMCTracks(DataEvent event) {//, CalibrationConstantsLoader ccd
                 Helix helix = new Helix(x, y, z, px, py, pz, q, B, xb, yb, units);
 
                 //Intersection points with the middle of the bar or wedge
-                projection.set_BarIntersect(helix.getHelixPointAtR(Parameters.BAR_MIDDLE_RADIUS));
+
+		projection.set_BarIntersect(helix.getHelixPointAtR(Parameters.BAR_MIDDLE_RADIUS));
                 projection.set_WedgeIntersect(helix.getHelixPointAtR(Parameters.WEDGE_MIDDLE_RADIUS));
 
                 //Path length to the middle of the bar or wedge
-                projection.set_BarPathLength((float) Math.abs(helix.getLAtR(Parameters.BAR_INNER_RADIUS)));
+
+		projection.set_BarPathLength((float) Math.abs(helix.getLAtR(Parameters.BAR_INNER_RADIUS)));
                 projection.set_WedgePathLength((float) Math.abs(helix.getLAtR(Parameters.WEDGE_INNER_RADIUS)));
 
                 //Path length from the inner radius to the middle radius
-                projection.set_BarInPathLength((float) Math.abs(helix.getLAtR(Parameters.BAR_MIDDLE_RADIUS)) - projection.get_BarPathLength());
+
+		projection.set_BarInPathLength((float) Math.abs(helix.getLAtR(Parameters.BAR_MIDDLE_RADIUS)) - projection.get_BarPathLength());
                 projection.set_WedgeInPathLength((float) Math.abs(helix.getLAtR(Parameters.WEDGE_MIDDLE_RADIUS)) - projection.get_WedgePathLength());
                 Projections.add(projection);
                 fill_out_bank(outputBank, projection, i);
@@ -261,4 +266,4 @@ public static void main(String arg[]) {
 
         System.out.print("Read " + event_number + " events");
     }
-}
+}

reconstruction/alert/src/main/java/org/jlab/rec/atof/banks/RecoBankWriter.java

@@ -11,7 +11,7 @@
 
 /**
  *
- * @author npilleux
+ * @authors npilleux,churaman
  */
 public class RecoBankWriter {
 

reconstruction/alert/src/main/java/org/jlab/rec/atof/constants/Parameters.java

@@ -2,7 +2,7 @@
 
 /**
  *
- * @author npilleux
+ * @authors npilleux,churaman
  */
 public class Parameters {