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JBR Genome Browser Documentation

About

JBR Genome Browser is a general purpose genome browser with integrated semi-supervised peak calling support using SPAN. The browser is optimized to work with large session containing BigWig and BigBed tracks.

Installation

See Installation section at JBR home page.

Basic Features

JBR Main Window Example:

Main browser window areas are:

• Information about current genome range and chromosome
• Actions toolbar
• Tracks panel

Information about current genome range and chromosome:

Browser Sessions

This section shows how to create new sessions, save them and load existing ones.

Load Tracks

This section shows how to load tracks of different types into JBR.

Open Genome Location

This section shows how to open desired genome location or gene.

Navigation

This section shows how to scroll, zoom genome data and select regions.

Track Options

This section shows basic tracks operations available in track context menu and how to reorder tracks.

Genes Track View

This section shows Genes track features.

Advanced Features

Span Peak calling

This section shows how to use SPAN semi-supervised peak calling in JBR.

Score Filtering

This section shows how to do score filtering in a semi-supervised-like way.

Tracks Overlap

This section demonstrates how to check tracks consistency using tracks Overlap metric.