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1. gnomAD_DB gnomAD_DB Public

   This package scales the huge gnomAD files to a SQLite database, which is easy and fast to query. It extracts from a gnomAD vcf the minor allele frequency for each variant.

   Python 43 10

2. ratschlab/DeepSpot ratschlab/DeepSpot Public

   DeepSpot: Leveraging Spatial Context for Enhanced Spatial Transcriptomics Prediction from H&E Images

   Jupyter Notebook 6 1

3. ratschlab/aestetik ratschlab/aestetik Public

   AESTETIK: AutoEncoder for Spatial Transcriptomics Expression with Topology and Image Knowledge

   Python 12

4. kipoi/kipoiseq kipoi/kipoiseq Public

   Standard set of data-loaders for training and making predictions for DNA sequence-based models.

   Python 81 13

5. kipoi/kipoi kipoi/kipoi Public

   Kipoi's model zoo API

   Jupyter Notebook 235 41

6. mclustpy mclustpy Public

   Model-based clustering based on parameterized finite Gaussian mixture models. Models are estimated by EM algorithm initialized by hierarchical model-based agglomerative clustering. The optimal mode…

   Python 9 1