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1. demo_reproducibility_kanduricetal2021 demo_reproducibility_kanduricetal2021 Public

   Demonstration of reproducibility and deployability of the computational workflow of the article "Profiling the baseline performance and limits of machine learning models for adaptive immune recepto…

   HTML

2. simAIRR simAIRR Public

   A tool for simulation of antigen-experienced adaptive immune receptor repertoire (AIRR) datasets for benchmarking of machine learning (ML) methods.

   Python 1

3. transcriptomicsBatchEffectSim transcriptomicsBatchEffectSim Public

   scripts to simulate batch and biological effects in transcriptomics data to explore the problem terrain of handling batch effects

   R

4. usecases_simairr usecases_simairr Public

   Python

5. bionumpy/bionumpy bionumpy/bionumpy Public

   Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/

   Python 240 14

6. uio-bmi/immuneML uio-bmi/immuneML Public

   immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.

   Python 62 29